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Author Details

Pardis C Sabeti
Harvard University
1997
220
69
PMIDPaper TitleJournal TitlePublished Year
37930192Three linked variants have opposing regulatory effects on isovaleryl-CoA dehydrogenase gene expression.Hum Mol Genet2024
37946059Author Correction: Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants.Nat Med2024
37930192Three linked variants have opposing regulatory effects on isovaleryl-CoA dehydrogenase gene expression.Hum Mol Genet2024
37946059Author Correction: Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants.Nat Med2024
32418034Lassa Virus Genetics.Curr Top Microbiol Immunol2023
36268576Distinguishing Severe Acute Respiratory Syndrome Coronavirus 2 Persistence and Reinfection: A Retrospective Cohort Study.Clin Infect Dis2023
35616119Early Introduction and Rise of the Omicron Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variant in Highly Vaccinated University Populations.Clin Infect Dis2023
36417917Systemic administration of novel engineered AAV capsids facilitates enhanced transgene expression in the macaque CNS.Med2023
37662407Improving diagnosis of non-malarial fevers in Senegal: <i>Borrelia</i> and the contribution of tick-borne bacteria.medRxiv2023
37738247Recommendations on data sharing in HIV drug resistance research.PLoS Med2023
37651316Whole genome sequencing of human Borrelia burgdorferi isolates reveals linked blocks of accessory genome elements located on plasmids and associated with human dissemination.PLoS Pathog2023
37808651Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling.bioRxiv2023
37732792Development of Cas13a-based assays for <i>Neisseria gonorrhoeae</i> detection and gyrase A determination.mSphere2023
37786711Model-directed generation of CRISPR-Cas13a guide RNAs designs artificial sequences that improve nucleic acid detection.bioRxiv2023
37873325Inferring Viral Transmission Pathways from Within-Host Variation.medRxiv2023
37095220CRISPR-Cas-amplified urinary biomarkers for multiplexed and portable cancer diagnostics.Nat Nanotechnol2023
36909473Whole genome sequencing of <i>Borrelia burgdorferi</i> isolates reveals linked clusters of plasmid-borne accessory genome elements associated with virulence.bioRxiv2023
36656774The 2022 RSV surge was driven by multiple viral lineages.medRxiv2023
37398281The HLA-II immunopeptidome of SARS-CoV-2.bioRxiv2023
37391481Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques.Nat Commun2023
36812457Viral Lineages in the 2022 RSV Surge in the United States.N Engl J Med2023
36806790Protecting public health in Iran in the face of oppression.Nat Med2023
37438412Antigen test swabs are comparable to nasopharyngeal swabs for sequencing of SARS-CoV-2.Sci Rep2023
37104599Evolutionary constraint and innovation across hundreds of placental mammals.Science2023
37104592The functional and evolutionary impacts of human-specific deletions in conserved elements.Science2023
36732505High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection.Nat Commun2023
37293004Development of Cas13a-based Assays for <i>Neisseria gonorrhoeae</i> Detection and Gyrase A Determination.medRxiv2023
37542071Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria.Nat Commun2023
36847705Neuropathological features of SARS-CoV-2 delta and omicron variants.J Neuropathol Exp Neurol2023
36846826Phylodynamics of deer tick virus in North America.Virus Evol2023
36781860Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria.Nat Commun2023
32418034Lassa Virus Genetics.Curr Top Microbiol Immunol2023
37808651Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling.bioRxiv2023
37662407Improving diagnosis of non-malarial fevers in Senegal: <i>Borrelia</i> and the contribution of tick-borne bacteria.medRxiv2023
37786711Model-directed generation of CRISPR-Cas13a guide RNAs designs artificial sequences that improve nucleic acid detection.bioRxiv2023
37651316Whole genome sequencing of human Borrelia burgdorferi isolates reveals linked blocks of accessory genome elements located on plasmids and associated with human dissemination.PLoS Pathog2023
37738247Recommendations on data sharing in HIV drug resistance research.PLoS Med2023
37542071Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria.Nat Commun2023
37732792Development of Cas13a-based assays for <i>Neisseria gonorrhoeae</i> detection and gyrase A determination.mSphere2023
37873325Inferring Viral Transmission Pathways from Within-Host Variation.medRxiv2023
35616119Early Introduction and Rise of the Omicron Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variant in Highly Vaccinated University Populations.Clin Infect Dis2023
37391481Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques.Nat Commun2023
37104599Evolutionary constraint and innovation across hundreds of placental mammals.Science2023
37104592The functional and evolutionary impacts of human-specific deletions in conserved elements.Science2023
37438412Antigen test swabs are comparable to nasopharyngeal swabs for sequencing of SARS-CoV-2.Sci Rep2023
37398281The HLA-II immunopeptidome of SARS-CoV-2.bioRxiv2023
37095220CRISPR-Cas-amplified urinary biomarkers for multiplexed and portable cancer diagnostics.Nat Nanotechnol2023
37293004Development of Cas13a-based Assays for <i>Neisseria gonorrhoeae</i> Detection and Gyrase A Determination.medRxiv2023
36656774The 2022 RSV surge was driven by multiple viral lineages.medRxiv2023
36812457Viral Lineages in the 2022 RSV Surge in the United States.N Engl J Med2023
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Collaborators

Stephen F Schaffner
Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard
Co-authored papers 59
Daniel J Park
Broad Institute of MIT and Harvard
Co-authored papers 53
Robert F Garry
Tulane University School of Medicine
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Adrianne Gladden-Young
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John S Schieffelin
Tulane University
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Cameron Myhrvold
Princeton University
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University of Massachusetts Medical School
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University of Maine
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Shirlee Wohl
The Scripps Research Institute
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Bruce W Birren
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Andreas Gnirke
The Center for Genome Architecture, Baylor College of Medicine
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Jeremy Luban
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Edward T Ryan
Massachusetts General Hospital
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Catherine M Brown
Hinton State Laboratory Institute
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Andrew Rambaut
Institute of Ecology and Evolution, University of Edinburgh
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Elinor K Karlsson
Co-authored papers 7
Amanda K Lukens
Harvard T.H. Chan School of Public Health
Co-authored papers 7
Daniel G Bausch
London School of Hygiene & Tropical Medicine
Co-authored papers 6
John L Rinn
Co-authored papers 6
David Altshuler
Broad Institute of Harvard and Massachusetts Institute of Technology (MIT)
Co-authored papers 6
Nathan D Grubaugh
Yale School of Public Health
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Karthik Gangavarapu
the Scripps Research Institute
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Tarjei S Mikkelsen
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Gary P Kobinger
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Release 1.2