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Author Details

Rakesh Nagarajan
Current or past members of the College of American Pathologists
1999
65
38
PMIDPaper TitleJournal TitlePublished Year
35671151Four-Year Laboratory Performance of the First College of American Pathologists In Silico Next-Generation Sequencing Bioinformatics Proficiency Testing Surveys.Arch Pathol Lab Med2023
33450747An Overview of Characteristics of Clinical Next-Generation Sequencing-Based Testing for Hematologic Malignancies.Arch Pathol Lab Med2021
31986076Proficiency Testing of Standardized Samples Shows High Interlaboratory Agreement for Clinical Next Generation Sequencing-Based Hematologic Malignancy Assays With Survey Material-Specific Differences in Variant Frequencies.Arch Pathol Lab Med2020
30376374Proficiency Testing of Standardized Samples Shows Very High Interlaboratory Agreement for Clinical Next-Generation Sequencing-Based Oncology Assays.Arch Pathol Lab Med2019
29028368A Window Into Clinical Next-Generation Sequencing-Based Oncology Testing Practices.Arch Pathol Lab Med2017
26901284Next-Generation Sequencing Informatics: Challenges and Strategies for Implementation in a Clinical Environment.Arch Pathol Lab Med2016
25152313College of American Pathologists' laboratory standards for next-generation sequencing clinical tests.Arch Pathol Lab Med2015
26332594Identification of Medically Actionable Secondary Findings in the 1000 Genomes.PLoS One2015
26325296caTissue Suite to OpenSpecimen: Developing an extensible, open source, web-based biobanking management system.J Biomed Inform2015
26154004Good laboratory practice for clinical next-generation sequencing informatics pipelines.Nat Biotechnol2015
25345567Clinical next-generation sequencing in patients with non-small cell lung cancer.Cancer2015
24211365Validation of a next-generation sequencing assay for clinical molecular oncology.J Mol Diagn2014
24672737The 2013 symposium on pathology data integration and clinical decision support and the current state of field.J Pathol Inform2014
23387820An integrated approach to characterize transcription factor and microRNA regulatory networks involved in Schwann cell response to peripheral nerve injury.BMC Genomics2013
24303327Clinical genomicist workstation.AMIA Jt Summits Transl Sci Proc2013
22301551Real-time assessment of community health needs and concerns.Sci Transl Med2012
22939401Resequencing analysis of the candidate tyrosine kinase and RAS pathway gene families in multiple myeloma.Cancer Genet2012
23056333Expression and function of PML-RARA in the hematopoietic progenitor cells of Ctsg-PML-RARA mice.PLoS One2012
22817890The origin and evolution of mutations in acute myeloid leukemia.Cell2012
22654893Three ontologies to define phenotype measurement data.Front Genet2012
21190992Rara haploinsufficiency modestly influences the phenotype of acute promyelocytic leukemia in mice.Blood2011
22131398MicroRNAs modulate Schwann cell response to nerve injury by reinforcing transcriptional silencing of dedifferentiation-related genes.J Neurosci2011
21745356Identification of transcriptional regulatory networks specific to pilocytic astrocytoma.BMC Med Genomics2011
21325289Array-based comparative genomic hybridization identifies CDK4 and FOXM1 alterations as independent predictors of survival in malignant peripheral nerve sheath tumor.Clin Cancer Res2011
21411665Regulation of the PMP22 gene through an intronic enhancer.J Neurosci2011
21505135Identification of a novel TP53 cancer susceptibility mutation through whole-genome sequencing of a patient with therapy-related AML.JAMA2011
21504712High resolution array comparative genomic hybridization identifies copy number alterations in diffuse large B-cell lymphoma that predict response to immuno-chemotherapy.Cancer Genet2011
20529848Adaptation of myocardial substrate metabolism to a ketogenic nutrient environment.J Biol Chem2010
21044070Locus-wide identification of Egr2/Krox20 regulatory targets in myelin genes.J Neurochem2010
21067377DNMT3A mutations in acute myeloid leukemia.N Engl J Med2010
20935160Next-generation sequencing identifies the natural killer cell microRNA transcriptome.Genome Res2010
20876853Complete characterization of the microRNAome in a patient with acute myeloid leukemia.Blood2010
19244508Congenital hypomyelinating neuropathy with lethal conduction failure in mice carrying the Egr2 I268N mutation.J Neurosci2009
20443915The Washington University Institute for Clinical and Translational Sciences.Clin Transl Sci2009
19657110Recurring mutations found by sequencing an acute myeloid leukemia genome.N Engl J Med2009
19651600Acquired copy number alterations in adult acute myeloid leukemia genomes.Proc Natl Acad Sci U S A2009
19794125Alterations of BRAF and HIPK2 loci predominate in sporadic pilocytic astrocytoma.Neurology2009
19451695High throughput digital quantification of mRNA abundance in primary human acute myeloid leukemia samples.J Clin Invest2009
19550198Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs.Acad Med2009
19197039Keeping raw data in context.Science2009
18160671Identification of somatic JAK1 mutations in patients with acute myeloid leukemia.Blood2008
18999130Natural language processing to identify adverse drug events.AMIA Annu Symp Proc2008
18987736DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.Nature2008
18999296caBIG compatibility review system: software to support the evaluation of applications using defined interoperability criteria.AMIA Annu Symp Proc2008
18650334Analysis of peripheral nerve expression profiles identifies a novel myelin glycoprotein, MP11.J Neurosci2008
18291030Computational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia.Genome Biol2008
18270328Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia.Blood2008
18408760High-resolution, dual-platform aCGH analysis reveals frequent HIPK2 amplification and increased expression in pilocytic astrocytomas.Oncogene2008
17517777PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysis.Nucleic Acids Res2007
18634568Interactions of Sox10 and Egr2 in myelin gene regulation.Neuron Glia Biol2007
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Collaborators

Mark A Watson
Washington University School of Medicine
Co-authored papers 18
Timothy J Ley
Washington University School of Medicine
Co-authored papers 16
Jacqueline E Payton
Washington University School of Medicine.
Co-authored papers 14
Daniel C Link
Washington University School of Medicine
Co-authored papers 12
Elaine R Mardis
The Ohio State University
Co-authored papers 12
Richard K Wilson
The Ohio State University
Co-authored papers 10
John F DiPersio
Washington University School of Medicine
Co-authored papers 9
Timothy A Graubert
Massachusetts General Hospital
Co-authored papers 9
Michael D McLellan
McDonnell Genome Institute, Washington University in St. Louis
Co-authored papers 9
Matthew J Walter
Washington University School of Medicine in St. Louis
Co-authored papers 8
Sharon E Heath
Washington University School of Medicine.
Co-authored papers 8
Daniel C Koboldt
Institute for Genomic Medicine, Nationwide Children's Hospital
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Peter Westervelt
Washington University School of Medicine
Co-authored papers 7
Shashikant Kulkarni
Centene Center for Health Transformation, Centene Corporation
Co-authored papers 7
David H Gutmann
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Rhonda E Ries
Clinical Research Division, Fred Hutchinson Cancer Research Center
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Robert S Fulton
McDonnell Genome Institute, Washington University School of Medicine
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Jason D Merker
UNC School of Medicine, The University of North Carolina at Chapel Hill
Co-authored papers 6
Vincent Magrini
The Ohio State University
Co-authored papers 6
Li Ding
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 6
Arie Perry
University of California san francisco
Co-authored papers 5
Lucinda Fulton
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 5
Mark J Routbort
University of Texas MD Anderson Cancer Center
Co-authored papers 5
Ken Chen
University of Texas MD Anderson Cancer Center
Co-authored papers 4
David E Larson
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 4
Sean McGrath
Harvard T.H. Chan School of Public Health
Co-authored papers 4
Catherine E Cottrell
Nationwide Children's Hospital
Co-authored papers 4
David H Spencer
Washington University School of Medicine.
Co-authored papers 3
Michelle O'Laughlin
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 3
Jason Walker
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Release 1.2