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Author Details

Thomas Walter
PSL University
2000
41
23
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36280749HT-smFISH: a cost-effective and flexible workflow for high-throughput single-molecule RNA imaging.Nat Protoc2023
36280749HT-smFISH: a cost-effective and flexible workflow for high-throughput single-molecule RNA imaging.Nat Protoc2023
37608772Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: A report of the International Immuno-Oncology Biomarker Working Group on Breast CancerJ Pathol2023
37608771Spatial analyses of immune cell infiltration in cancer: current methods and future directions: A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer.J Pathol2023
37117166An interactive murine single-cell atlas of the lung responses to radiation injury.Nat Commun2023
37608772Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: A report of the International Immuno-Oncology Biomarker Working Group on Breast CancerJ Pathol2023
37608771Spatial analyses of immune cell infiltration in cancer: current methods and future directions: A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer.J Pathol2023
37117166An interactive murine single-cell atlas of the lung responses to radiation injury.Nat Commun2023
34623634Neural network fast-classifies biological images through features selecting to power automated microscopy.J Microsc2022
36516847Deep learning identifies morphological patterns of homologous recombination deficiency in luminal breast cancers from whole slide images.Cell Rep Med2022
34623634Neural network fast-classifies biological images through features selecting to power automated microscopy.J Microsc2022
35347070FISH-quant v2: a scalable and modular tool for smFISH image analysis.RNA2022
35347070FISH-quant v2: a scalable and modular tool for smFISH image analysis.RNA2022
36516847Deep learning identifies morphological patterns of homologous recombination deficiency in luminal breast cancers from whole slide images.Cell Rep Med2022
34015259Which image-based phenotypes are most promising for using AI to understand cellular functions and why?Cell Syst2021
34015259Which image-based phenotypes are most promising for using AI to understand cellular functions and why?Cell Syst2021
33833036Spatial transcriptomics for respiratory research and medicine.Eur Respir J2021
33649340A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport.Nat Commun2021
33649340A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport.Nat Commun2021
33833036Spatial transcriptomics for respiratory research and medicine.Eur Respir J2021
31608933Domain-invariant features for mechanism of action prediction in a multi-cell-line drug screen.Bioinformatics2020
31608933Domain-invariant features for mechanism of action prediction in a multi-cell-line drug screen.Bioinformatics2020
32783880A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting.Dev Cell2020
32783880A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting.Dev Cell2020
30716022Segmentation of Nuclei in Histopathology Images by Deep Regression of the Distance Map.IEEE Trans Med Imaging2019
31054036Current Advances in Protein Import into Peroxisomes.Protein J2019
30716022Segmentation of Nuclei in Histopathology Images by Deep Regression of the Distance Map.IEEE Trans Med Imaging2019
31054036Current Advances in Protein Import into Peroxisomes.Protein J2019
30389932A computational framework to study sub-cellular RNA localization.Nat Commun2018
30389932A computational framework to study sub-cellular RNA localization.Nat Commun2018
28949440Kernel Multitask Regression for Toxicogenetics.Mol Inform2017
28949440Kernel Multitask Regression for Toxicogenetics.Mol Inform2017
26953350ARHGEF17 is an essential spindle assembly checkpoint factor that targets Mps1 to kinetochores.J Cell Biol2016
26953350ARHGEF17 is an essential spindle assembly checkpoint factor that targets Mps1 to kinetochores.J Cell Biol2016
27599845smiFISH and FISH-quant - a flexible single RNA detection approach with super-resolution capability.Nucleic Acids Res2016
27599845smiFISH and FISH-quant - a flexible single RNA detection approach with super-resolution capability.Nucleic Acids Res2016
25547073Assessment of algorithms for mitosis detection in breast cancer histopathology images.Med Image Anal2015
25547073Assessment of algorithms for mitosis detection in breast cancer histopathology images.Med Image Anal2015
26353350Waterpixels.IEEE Trans Image Process2015
26072499A generic methodological framework for studying single cell motility in high-throughput time-lapse data.Bioinformatics2015
26353350Waterpixels.IEEE Trans Image Process2015
26072499A generic methodological framework for studying single cell motility in high-throughput time-lapse data.Bioinformatics2015
24943848Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation.Mol Biol Cell2014
25373780A genomic Multiprocess survey of machineries that control and link cell shape, microtubule organization, and cell-cycle progression.Dev Cell2014
25300793MAP1S controls microtubule stability throughout the cell cycle in human cells.J Cell Sci2014
24943848Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation.Mol Biol Cell2014
25300793MAP1S controls microtubule stability throughout the cell cycle in human cells.J Cell Sci2014
25373780A genomic Multiprocess survey of machineries that control and link cell shape, microtubule organization, and cell-cycle progression.Dev Cell2014
24131777Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay.BMC Bioinformatics2013
24131777Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay.BMC Bioinformatics2013
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Collaborators

Jan Ellenberg
Institute of Child Health and Human Development
Co-authored papers 13
Beate Neumann
Center for Molecular Materials, Universitat Bielefeld, Universitatsstrasse 25
Co-authored papers 8
Florian Mueller
Institut Pasteur, Universite de Paris
Co-authored papers 8
Jean-Karim H??rich??
University of California san francisco
Co-authored papers 7
Rainer Pepperkok
Translational Lung Research Center Heidelberg, German Center for Lung Research
Co-authored papers 5
Christophe Zimmer
Institut Pasteur, Universite Paris Cite, France Institut Pasteur
Co-authored papers 4
Daniel W Gerlich
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA)
Co-authored papers 3
Nasir Rajpoot
University of Warwick, University Hospitals Coventry, UK The Alan Turing Institute
Co-authored papers 3
Paul J van Diest
University Medical Center Utrecht
Co-authored papers 3
Wei Yang
Co-authored papers 2
Christos Sotiriou
Co-authored papers 2
Ina Poser
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 2
Stephen M Hewitt
Center for Cancer Research, National Cancer Institute
Co-authored papers 2
Sandra Demaria
Weill Cornell Medical College
Co-authored papers 2
John M S Bartlett
University of Edinburgh
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Sacha Gnjatic
The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Joel Saltz
Stony Brook University
Co-authored papers 2
Jeroen A W M van der Laak
Radboud University Medical Center
Co-authored papers 2
Wolfgang Huber
Technische Universitat Munchen
Co-authored papers 2
Albrecht Stenzinger
Institute of Pathology, University Hospital Heidelberg
Co-authored papers 2
William F Symmans
Co-authored papers 2
Michael Vieth
Institute of Pathology, Friedrich-Alexander-University Erlangen-Nuremberg
Co-authored papers 2
David A Moore
University College London Cancer Institute
Co-authored papers 2
David L Rimm
Yale University School of Medicine
Co-authored papers 2
William M Gallagher
All-Island Cancer Research Institute, UCD Conway Institute, University College Dublin
Co-authored papers 2
Hannah Y Wen
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Lajos Pusztai
Co-authored papers 2
Paula I Gonzalez-Ericsson
Co-authored papers 2
Jorge S Reis-Filho
Memorial Sloan-Kettering Cancer Center
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Jochen K Lennerz
Massachusetts General Hospital/Harvard Medical School
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Release 1.2