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Author Details

Yang Shen
The Second Affiliated Hospital of Nanchang University
2006
46
21
PMIDPaper TitleJournal TitlePublished Year
37351314A report of a pedigree with compound heterozygous mutations in the <i>SLC22A5</i> gene.Front Pediatr2023
37577664Structure-Informed Protein Language Models are Robust Predictors for Variant Effects.Res Sq2023
37351314A report of a pedigree with compound heterozygous mutations in the <i>SLC22A5</i> gene.Front Pediatr2023
37577664Structure-Informed Protein Language Models are Robust Predictors for Variant Effects.Res Sq2023
35058437Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2.Nat Commun2022
35647617Bringing Your Own View: Graph Contrastive Learning without Prefabricated Data Augmentations.Proc Int Conf Web Search Data Min2022
36193887Machine learning-assisted elucidation of CD81-CD44 interactions in promoting cancer stemness and extracellular vesicle integrity.Elife2022
36124802Cross-modality and self-supervised protein embedding for compound-protein affinity and contact prediction.Bioinformatics2022
35058437Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2.Nat Commun2022
35647617Bringing Your Own View: Graph Contrastive Learning without Prefabricated Data Augmentations.Proc Int Conf Web Search Data Min2022
36124802Cross-modality and self-supervised protein embedding for compound-protein affinity and contact prediction.Bioinformatics2022
36193887Machine learning-assisted elucidation of CD81-CD44 interactions in promoting cancer stemness and extracellular vesicle integrity.Elife2022
33347301Explainable Deep Relational Networks for Predicting Compound-Protein Affinities and Contacts.J Chem Inf Model2021
33755048TALE: Transformer-based protein function Annotation with joint sequence-Label Embedding.Bioinformatics2021
33347301Explainable Deep Relational Networks for Predicting Compound-Protein Affinities and Contacts.J Chem Inf Model2021
34381029ICAM1 initiates CTC cluster formation and trans-endothelial migration in lung metastasis of breast cancer.Nat Commun2021
34423306Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design.Proc Mach Learn Res2021
33755048TALE: Transformer-based protein function Annotation with joint sequence-Label Embedding.Bioinformatics2021
34381029ICAM1 initiates CTC cluster formation and trans-endothelial migration in lung metastasis of breast cancer.Nat Commun2021
34423306Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design.Proc Mach Learn Res2021
32558561Bayesian Active Learning for Optimization and Uncertainty Quantification in Protein Docking.J Chem Theory Comput2020
32144844Energy-based graph convolutional networks for scoring protein docking models.Proteins2020
31969394Extracellular Domains I and II of cell-surface glycoprotein CD44 mediate its <i>trans</i>-homophilic dimerization and tumor cluster aggregation.J Biol Chem2020
33283198When Does Self-Supervision Help Graph Convolutional Networks?Proc Mach Learn Res2020
32945673De Novo Protein Design for Novel Folds Using Guided Conditional Wasserstein Generative Adversarial Networks.J Chem Inf Model2020
32558561Bayesian Active Learning for Optimization and Uncertainty Quantification in Protein Docking.J Chem Theory Comput2020
32657357Network-principled deep generative models for designing drug combinations as graph sets.Bioinformatics2020
31969394Extracellular Domains I and II of cell-surface glycoprotein CD44 mediate its <i>trans</i>-homophilic dimerization and tumor cluster aggregation.J Biol Chem2020
33283198When Does Self-Supervision Help Graph Convolutional Networks?Proc Mach Learn Res2020
32945673De Novo Protein Design for Novel Folds Using Guided Conditional Wasserstein Generative Adversarial Networks.J Chem Inf Model2020
32657357Network-principled deep generative models for designing drug combinations as graph sets.Bioinformatics2020
32144844Energy-based graph convolutional networks for scoring protein docking models.Proteins2020
30361447Homophilic CD44 Interactions Mediate Tumor Cell Aggregation and Polyclonal Metastasis in Patient-Derived Breast Cancer Models.Cancer Discov2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
32508484Learning to Optimize in Swarms.Adv Neural Inf Process Syst2019
30361447Homophilic CD44 Interactions Mediate Tumor Cell Aggregation and Polyclonal Metastasis in Patient-Derived Breast Cancer Models.Cancer Discov2019
30768156DeepAffinity: interpretable deep learning of compound-protein affinity through unified recurrent and convolutional neural networks.Bioinformatics2019
31209948Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge.Hum Mutat2019
31398275A Genetically Encoded, Phage-Displayed Cyclic-Peptide Library.Angew Chem Int Ed Engl2019
30936563Engineering a HER2-specific antibody-drug conjugate to increase lysosomal delivery and therapeutic efficacy.Nat Biotechnol2019
31294896Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants.Hum Mutat2019
31241222Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer.Hum Mutat2019
32508484Learning to Optimize in Swarms.Adv Neural Inf Process Syst2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
31241222Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer.Hum Mutat2019
31294896Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants.Hum Mutat2019
31209948Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge.Hum Mutat2019
31398275A Genetically Encoded, Phage-Displayed Cyclic-Peptide Library.Angew Chem Int Ed Engl2019
30768156DeepAffinity: interpretable deep learning of compound-protein affinity through unified recurrent and convolutional neural networks.Bioinformatics2019
30936563Engineering a HER2-specific antibody-drug conjugate to increase lysosomal delivery and therapeutic efficacy.Nat Biotechnol2019
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Collaborators

Yue Cao
Co-authored papers 11
Mostafa Karimi
Texas A&M University, College Station
Co-authored papers 9
Sandor Vajda
Boston University
Co-authored papers 8
Dima Kozakov
Stony Brook University
Co-authored papers 5
Huiping Liu
Co-authored papers 5
Zhangyang Wang
Department of Electrical and Computer Engineering University of Texas at Austin.
Co-authored papers 5
Dmitri Beglov
Boston University
Co-authored papers 4
Yuzhi Jia
Feinberg School of Medicine, Northwestern University
Co-authored papers 4
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 3
Pier Luigi Martelli
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 3
Massimo Cristofanilli
Weill Cornell School of Medicine
Co-authored papers 3
Olivier Lichtarge
Baylor College of Medicine
Co-authored papers 3
Castrense Savojardo
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 3
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 2
Predrag Radivojac
Indiana University
Co-authored papers 2
Sheng-You Huang
Huazhong University of Science and Technology
Co-authored papers 2
Sean D Mooney
University of Washington
Co-authored papers 2
Patrick R Griffin
The Scripps Research Institute
Co-authored papers 2
Chia-Feng Tsai
Pacific Northwest National Laboratory
Co-authored papers 2
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 2
Thom Vreven
Visterra Inc.
Co-authored papers 2
Adrien S J Melquiond
Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht
Co-authored papers 2
Steven E Brenner
University of California berkeley
Co-authored papers 2
Tujin Shi
Pacific Northwest National Laboratory
Co-authored papers 2
Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 2
Ilya A Vakser
The University of Kansas
Co-authored papers 2
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 2
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 2
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 2
Petras J Kundrotas
The University of Kansas
Co-authored papers 2
Release 1.2