Author details

Full Name

Ted Liefeld

Affiliation

Moores Cancer Center, University of California San Diego

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37398372	NMFClustering: Accessible NMF-based clustering utilizing GPU acceleration.	bioRxiv	2023
37989764	Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS.	Nat Protoc	2023
37398372	NMFClustering: Accessible NMF-based clustering utilizing GPU acceleration.	bioRxiv	2023
37989764	Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS.	Nat Protoc	2023
34095869	A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells.	STAR Protoc	2021
34095869	A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells.	STAR Protoc	2021
32383980	Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes.	JCO Clin Cancer Inform	2020
32383980	Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes.	JCO Clin Cancer Inform	2020
30559381	Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.	Nature	2019
30559381	Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.	Nature	2019
29915188	GeNets: a unified web platform for network-based genomic analyses.	Nat Methods	2018
29915188	GeNets: a unified web platform for network-based genomic analyses.	Nat Methods	2018
28822753	The GenePattern Notebook Environment.	Cell Syst	2017
28822753	The GenePattern Notebook Environment.	Cell Syst	2017
26780094	Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.	Nat Methods	2016
26780094	Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.	Nat Methods	2016
26656090	Correlating chemical sensitivity and basal gene expression reveals mechanism of action.	Nat Chem Biol	2016
26656090	Correlating chemical sensitivity and basal gene expression reveals mechanism of action.	Nat Chem Biol	2016
26482930	Harnessing Connectivity in a Large-Scale Small-Molecule Sensitivity Dataset.	Cancer Discov	2015
26482930	Harnessing Connectivity in a Large-Scale Small-Molecule Sensitivity Dataset.	Cancer Discov	2015
23993102	An interactive resource to identify cancer genetic and lineage dependencies targeted by small molecules.	Cell	2013
23822732	GenePattern flow cytometry suite.	Source Code Biol Med	2013
23993102	An interactive resource to identify cancer genetic and lineage dependencies targeted by small molecules.	Cell	2013
23822732	GenePattern flow cytometry suite.	Source Code Biol Med	2013
22460905	The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.	Nature	2012
22460905	The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.	Nature	2012
21241896	Densely interconnected transcriptional circuits control cell states in human hematopoiesis.	Cell	2011
21430775	Initial genome sequencing and analysis of multiple myeloma.	Nature	2011
21241896	Densely interconnected transcriptional circuits control cell states in human hematopoiesis.	Cell	2011
21430775	Initial genome sequencing and analysis of multiple myeloma.	Nature	2011
20164920	The landscape of somatic copy-number alteration across human cancers.	Nature	2010
20164920	The landscape of somatic copy-number alteration across human cancers.	Nature	2010
16642009	GenePattern 2.0.	Nat Genet	2006
16642009	GenePattern 2.0.	Nat Genet	2006
16030072	GeneCruiser: a web service for the annotation of microarray data.	Bioinformatics	2005
16030072	GeneCruiser: a web service for the annotation of microarray data.	Bioinformatics	2005
16257380	The impact of Life Science Identifier on informatics data.	Drug Discov Today	2005
16257380	The impact of Life Science Identifier on informatics data.	Drug Discov Today	2005
15153306	Globally distributed object identification for biological knowledgebases.	Brief Bioinform	2004
15153306	Globally distributed object identification for biological knowledgebases.	Brief Bioinform	2004
14582520	Computational knowledge integration in biopharmaceutical research.	Brief Bioinform	2003
14582520	Computational knowledge integration in biopharmaceutical research.	Brief Bioinform	2003

1 - 42 of 42

Daniel J B Clarke

Icahn School of Medicine at Mount Sinai

Career Start Year 2018

Number of shared co-authors 0

Jeremy Goecks

Oregon Health & Science University

Career Start Year 2010

Number of shared co-authors 5

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 1

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 1

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 3

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 2

Shannan J Ho Sui

Harvard T.H. Chan School of Public Health

Career Start Year 2004

Number of shared co-authors 3

Leandro C Hermida

University of Pittsburgh

Career Start Year 2003

Number of shared co-authors 5

Chunlei Wu

The Scripps Research Institute

Career Start Year 2002

Number of shared co-authors 1

Andrew I Su

The Scripps Research Institute

Career Start Year 2001

Number of shared co-authors 2

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 1

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 5

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 11

Tony Burdett

European Bioinformatics Institute

Career Start Year 2000

Number of shared co-authors 1

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 4

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 0

Paul Shannon

Institute for Systems Biology

Career Start Year 1998

Number of shared co-authors 3

Helen Parkinson

European Bioinformatics Institute

Career Start Year 1997

Number of shared co-authors 5

J Lynn Fink

The University of Queensland Diamantina Institute, The University of Queensland

Career Start Year 1997

Number of shared co-authors 2

Alvis Brazma

European Bioinformatics Institute

Career Start Year 1996

Number of shared co-authors 4

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 15

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 2

Emmanuel Barillot

Institut Curie, Universite PSL

Career Start Year 1991

Number of shared co-authors 0

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 8

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 8

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 11

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 5

Warren A Kibbe

Duke Clinical Research Institute, Duke University

Career Start Year 1987

Number of shared co-authors 0

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 20

Christian J Stoeckert

Perelman School of Medicine, University of Pennsylvania

Career Start Year 1980

Number of shared co-authors 5

row(s) 1 - 30 of 30

Jill P Mesirov

University of California San Diego

Co-authored papers 12

Michael Reich

university of california san diego

Co-authored papers 10

Levi A Garraway

Broad Institute of Harvard and MIT

Co-authored papers 5

Todd R Golub

Broad Institute of MIT and Harvard

Co-authored papers 5

Matthew Meyerson

Broad Institute

Co-authored papers 4

Wendy Winckler

Co-authored papers 4

Gad Getz

Broad Institute of the Massachusetts Institute of Technology and Harvard

Co-authored papers 4

Stacey Gabriel

Broad Institute of MIT and Harvard

Co-authored papers 4

Jordi Barretina

Co-authored papers 4

Pablo Tamayo

University of California San Diego

Co-authored papers 3

Aviv Regev

Broad Institute of MIT and Harvard

Co-authored papers 3

Carrie Sougnez

The Broad Institute of Harvard and MIT

Co-authored papers 3

Gregory V Kryukov

Co-authored papers 3

Kristin G Ardlie

Co-authored papers 3

Jaime H Cheah

Johns Hopkins University School of Medicine

Co-authored papers 3

Scott Mahan

Co-authored papers 3

Alykhan F Shamji

Center for the Science of Therapeutics, Broad Institute

Co-authored papers 3

Joshua Gould

Co-authored papers 3

Nicolas Stransky

Co-authored papers 3

Robert C Onofrio

The Broad Institute of Harvard and MIT

Co-authored papers 3

Joshua A Bittker

Co-authored papers 3

Stuart L Schreiber

Broad Institute

Co-authored papers 3

Paul A Clemons

Broad Institute

Co-authored papers 3

Vlado Dan????k

Broad Institute

Co-authored papers 3

Barbara L Weber

Basser Center for BRCA, Abramson Cancer Center, University of Pennsylvania

Co-authored papers 2

Michael F Berger

Co-authored papers 2

Adam Korejwa

Co-authored papers 2

Lauren Murray

Co-authored papers 2

Markus Warmuth

Co-authored papers 2

Helga Thorvaldsd??ttir

Broad Institute of MIT and Harvard

Co-authored papers 2

1 - 30

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