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Author Details

David J Arenillas
BC Children's Hospital Research Institute, University of British Columbia
2005
29
20
PMIDPaper TitleJournal TitlePublished Year
37166953OnTarget: in silico design of MiniPromoters for targeted delivery of expression.Nucleic Acids Res2023
32917731Expression of Concern: Mechanisms underlying p53 regulation of <i>PIK3CA</i> transcription in ovarian surface epithelium and in ovarian cancer.J Cell Sci2020
29161433JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.Nucleic Acids Res2018
30040077MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations.Sci Data2018
29140473JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.Nucleic Acids Res2018
27794045Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.Nucleic Acids Res2017
27556059PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina.Mol Ther Methods Clin Dev2016
26531826JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles.Nucleic Acids Res2016
27857184YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses.Sci Rep2016
27334471CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs.Bioinformatics2016
25703386GeneYenta: a phenotype-based rare disease case matching tool based on online dating algorithms for the acceleration of exome interpretation.Hum Mutat2015
26204903Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development.BMC Genomics2015
25903198Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas.Genome Biol2015
25938884A SNP in the HTT promoter alters NF-κB binding and is a bidirectional genetic modifier of Huntington disease.Nat Neurosci2015
24194598JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.Nucleic Acids Res2014
22973536oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets.G3 (Bethesda)2012
21375730MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.BMC Bioinformatics2011
22144875Validation of skeletal muscle cis-regulatory module predictions reveals nucleotide composition bias in functional enhancers.PLoS Comput Biol2011
19906716JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.Nucleic Acids Res2010
20807748A regulatory toolbox of MiniPromoters to drive selective expression in the brain.Proc Natl Acad Sci U S A2010
20460467Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-Seq profiling and network analysis.Nucleic Acids Res2010
18971253The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences.Nucleic Acids Res2009
19381363Systems biology evaluation of immune responses induced by human host defence peptide LL-37 in mononuclear cells.Mol Biosyst2009
18270270Mechanisms underlying p53 regulation of PIK3CA transcription in ovarian surface epithelium and in ovarian cancer.J Cell Sci2008
18208319In silico detection of sequence variations modifying transcriptional regulation.PLoS Comput Biol2008
17576675oPOSSUM: integrated tools for analysis of regulatory motif over-representation.Nucleic Acids Res2007
16533400NovelFam3000--uncharacterized human protein domains conserved across model organisms.BMC Genomics2006
15772424Complete functional rescue of the ABCA1-/- mouse by human BAC transgenesis.J Lipid Res2005
15933209oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.Nucleic Acids Res2005
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Collaborators

Wyeth W Wasserman
BC Children's Hospital Research Institute, University of British Columbia
Co-authored papers 27
Anthony Mathelier
University of Oslo
Co-authored papers 11
Albin Sandelin
University of Copenhagen
Co-authored papers 6
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 6
Oriol Fornes
BC Children's Hospital Research Institute, University of British Columbia
Co-authored papers 5
Andrew T Kwon
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 4
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Shannan J Ho Sui
Harvard T.H. Chan School of Public Health
Co-authored papers 3
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Hans Ienasescu
Technical University of Denmark
Co-authored papers 2
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 2
Barry R Davies
Oncology R&D
Co-authored papers 2
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 2
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Steven J M Jones
University of British Columbia
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Xiaobei Zhao
University of Tennessee Health Science Center
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Michael R Hayden
Co-authored papers 2
Gordon B Mills
Knight Cancer Institute, Oregon Health and Sciences University
Co-authored papers 2
Hiromasa Ono
Database Center for Life Science
Co-authored papers 1
Andreas Lennartsson
Karolinska Institute
Co-authored papers 1
Shuhei Noguchi
RIKEN Center for Integrative Medical Sciences
Co-authored papers 1
Yulia A Medvedeva
Research Center of Biotechnology RAS, Russian Academy of Sciences
Co-authored papers 1
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 1
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 1
Hidemasa Bono
Hiroshima University
Co-authored papers 1
Marina Lizio
Cerevance Ltd
Co-authored papers 1
Eivind Valen
University of Bergen
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Imad Abugessaisa
RIKEN Center for Integrative Medical Sciences
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Release 1.2