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Author Details

Debojyoti Chakraborty
CSIR-Institute of Genomics & Integrative Biology
2012
30
14
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36752591CriSNPr, a single interface for the curated and de novo design of gRNAs for CRISPR diagnostics using diverse Cas systems.Elife2023
37558241Identification of G-quadruplex structures in MALAT1 lncRNA that interact with nucleolin and nucleophosmin.Nucleic Acids Res2023
37751355TOBF1 modulates mouse embryonic stem cell fate through regulating alternative splicing of pluripotency genes.Cell Rep2023
34761272Alternative splicing modulation mediated by G-quadruplex structures in MALAT1 lncRNA.Nucleic Acids Res2022
35838958FnCas9 Editor Linked Uniform Detection Assay for COVID-19.Methods Mol Biol2022
35791113Commentary: CRISPR gene editing for inherited retinal dystrophies: Towards clinical translation.Indian J Ophthalmol2022
36155952Capturing nucleic acid variants with precision using CRISPR diagnostics.Biosens Bioelectron2022
34016451Low-cost CRISPR diagnostics for resource-limited settings.Trends Genet2021
33765408Rapid identification and tracking of SARS-CoV-2 variants of concern.Lancet2021
33821751CRISPR Cas9 based genome editing in inherited retinal dystrophies.Ophthalmic Genet2021
33866136Rapid and accurate nucleobase detection using FnCas9 and its application in COVID-19 diagnosis.Biosens Bioelectron2021
33692517Voices of biotech research.Nat Biotechnol2021
34106048FnCas9-based CRISPR diagnostic for rapid and accurate detection of major SARS-CoV-2 variants on a paper strip.Elife2021
32220299Role of lncRNAs in stem cell maintenance and differentiation.Curr Top Dev Biol2020
33376128The Paf1 complex positively regulates enhancer activity in mouse embryonic stem cells.Life Sci Alliance2020
32658470Terminal Uridylyl Transferase Mediated Site-Directed Access to Clickable Chromatin Employing CRISPR-dCas9.J Am Chem Soc2020
32865332Ophthalmic genetics practice and research in India: Vision in 2020.Am J Med Genet C Semin Med Genet2020
30585723Restoration of miRNA-149 Expression by TmPyP4 Induced Unfolding of Quadruplex within Its Precursor.Biochemistry2019
31570623<i>Francisella novicida</i> Cas9 interrogates genomic DNA with very high specificity and can be used for mammalian genome editing.Proc Natl Acad Sci U S A2019
31425729Combinatorial role of two G-quadruplexes in 5' UTR of transforming growth factor β2 (TGFβ2).Biochim Biophys Acta Gen Subj2019
31255831Generation and characterization of induced pluripotent stem cell line (IGIBi001-A) from a sickle cell anemia patient with homozygous β-globin mutation.Stem Cell Res2019
29769662Novel internal regulators and candidate miRNAs within miR-379/miR-656 miRNA cluster can alter cellular phenotype of human glioblastoma.Sci Rep2018
29450416A G-quadruplex motif at the 3' end of sgRNAs improves CRISPR-Cas9 based genome editing efficiency.Chem Commun (Camb)2018
29241531lncRNA Panct1 Maintains Mouse Embryonic Stem Cell Identity by Regulating TOBF1 Recruitment to Oct-Sox Sequences in Early G1.Cell Rep2017
26900663Directed evolution of a recombinase that excises the provirus of most HIV-1 primary isolates with high specificity.Nat Biotechnol2016
27711765CRISPR/Cas9: a historical and chemical biology perspective of targeted genome engineering.Chem Soc Rev2016
27576906Inactivation of Cancer Mutations Utilizing CRISPR/Cas9.J Natl Cancer Inst2016
25911635Targeting Human Long Noncoding Transcripts by Endoribonuclease-Prepared siRNAs.J Biomol Screen2015
27135800Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells.Cell Syst2015
22327834Combined RNAi and localization for functionally dissecting long noncoding RNAs.Nat Methods2012
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Collaborators

Maciej Paszkowski-Rogacz
Faculty of Medicine and University Hospital Carl Gustav Carus
Co-authored papers 7
Frank Buchholz
University Hospital Carl Gustav Carus, Technische Universitat (TU) Dresden
Co-authored papers 7
Li Ding
Medical Faculty and University Hospital Carl Gustav Carus
Co-authored papers 5
Mirko Theis
Medical Faculty and University Hospital Carl Gustav Carus
Co-authored papers 4
Chunaram Choudhary
The Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 3
Adrian Francis Stewart
Center for Molecular and Cellular Bioengineering, Technische Universitat Dresden
Co-authored papers 2
Nikolai Slavov
and Barnett Institute, Northeastern University
Co-authored papers 1
Evan Z Macosko
Co-authored papers 1
Herbert Schulz
Clinic for Plastic, Otto von Guericke University
Co-authored papers 1
Norbert H??bner
Max Delbruck Center for Molecular Medicine in the Helmholtz Association (MDC)
Co-authored papers 1
Bharati Mehani
Center for Cancer Research, National Cancer Institute
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
James E Dahlman
Georgia Institute of Technology
Co-authored papers 1
Giriraj R Chandak
Co-authored papers 1
Radhika Tandon
All India Institute of Medical Sciences
Co-authored papers 1
Sukhdeep Singh
Center for Molecular and Cellular Bioengineering, University of Technology Dresden
Co-authored papers 1
Assen Roguev
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 1
Ina Poser
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 1
Howard Junca
Helmholtz Centre for Infection Research
Co-authored papers 1
Alistair N Boettiger
Co-authored papers 1
Giovanni Ciotta
Technische Universitaet Dresden
Co-authored papers 1
Madeline A Lancaster
UK Wellcome-MRC Cambridge Stem Cell Institute, University of Cambridge
Co-authored papers 1
Wai Kit Chu
The Chinese University of Hong Kong
Co-authored papers 1
Iliyan D Iliev
Cornell University
Co-authored papers 1
Maria Winzi
University Cancer Center
Co-authored papers 1
Matthias Mann
Max-Planck Institute of Biochemistry
Co-authored papers 1
Release 1.2