Author details

Full Name

Noam Shoresh

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37034577	Single-cell multi-scale footprinting reveals the modular organization of DNA regulatory elements.	bioRxiv	2023
37862349	Analyzing histone ChIP-seq data with a bin-based probability of being signal.		2023
35132425	At-home Testing and Risk Factors for Acquisition of SARS-CoV-2 Infection in a Major US Metropolitan Area.		2022
36195755	Long-range phasing of dynamic, tissue-specific and allele-specific regulatory elements.	Nat Genet	2022
35474001	Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2022
36381614	At-home Testing and Risk Factors for Acquisition of SARS-CoV-2 Infection in a Major US Metropolitan Area.	Open Forum Infectious Diseases	2022
32841603	Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer.	Cell	2020
32477409	An Optimized Competitive-Aging Method Reveals Gene-Drug Interactions Underlying the Chronological Lifespan of <i>Saccharomyces cerevisiae</i>.	Front Genet	2020
32728249	Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2020
32728101	Detecting sample swaps in diverse NGS data types using linkage disequilibrium.	Nat Commun	2020
31263286	Enhancer signatures stratify and predict outcomes of non-functional pancreatic neuroendocrine tumors.	Nat Med	2019
31848386	Hybridization-based capture of pathogen mRNA enables paired host-pathogen transcriptional analysis.	Scientific Reports	2019
31768064	Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination.	Nature Medicine	2019
31036669	Defining the core essential genome of Pseudomonas aeruginosa.	Proc Natl Acad Sci U S A	2019
30872641	Rapid identification and phylogenetic classification of diverse bacterial pathogens in a multiplexed hybridization assay targeting ribosomal RNA.	Scientific Reports	2019
31501535	Publisher Correction: Enhancer signatures stratify and predict outcomes of non-functional pancreatic neuroendocrine tumors.	Nat Med	2019
31171663	RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues.	Science	2019
29632380	Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types.	Nat Genet	2018
28183996	Antibiotic tolerance facilitates the evolution of resistance.	Science	2017
28636922	An Experimental Framework for Quantifying Bacterial Tolerance.	Biophysical Journal	2017
28753427	A Genetic Variant Associated with Five Vascular Diseases Is a Distal Regulator of Endothelin-1 Gene Expression.	Cell	2017
27151869	Single-molecule decoding of combinatorially modified nucleosomes.	Science	2016
26458175	Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state.	Nat Biotechnol	2015
25363779	Genetic and epigenetic fine mapping of causal autoimmune disease variants.	Nature	2015
25693563	Integrative analysis of 111 reference human epigenomes.	Nature	2015
25731168	Polyploidy can drive rapid adaptation in yeast.	Nature	2015
26000628	High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq Using Drop-Based Microfluidics.	PLoS One	2015
25164756	Comparative analysis of metazoan chromatin organization.	Nature	2014
25043002	Optimization of lag time underlies antibiotic tolerance in evolved bacterial populations.	Nature	2014
23333102	Genome-wide chromatin state transitions associated with developmental and environmental cues.	Cell	2013
23945932	In silico abstraction of zinc finger nuclease cleavage profiles reveals an expanded landscape of off-target sites.	Nucleic Acids Res	2013
22312636	Points of view: Data exploration.	Nature Methods	2012
22955991	ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.	Genome Res	2012
22196736	Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells.	Cell	2011
21441907	Mapping and analysis of chromatin state dynamics in nine human cell types.	Nature	2011
20616060	Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence.	Proceedings of the National Academy of Sciences of the United States of America	2010
19946276	Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA.	Nat Methods	2010
18713864	Evolution exacerbates the paradox of the plankton.	Proceedings of the National Academy of Sciences of the United States of America	2008
18408719	Exposing the fitness contribution of duplicated genes.	Nat Genet	2008
18779569	Accelerated evolution of resistance in multidrug environments.	Proceedings of the National Academy of Sciences of the United States of America	2008
18386099	Analytical results for individual and group selection of any intensity.	Bulletin of Mathematical Biology	2008
16543462	An equivalence principle for the incorporation of favorable mutations in asexual populations.	Science	2006