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| 36593406 | Accurate isoform discovery with IsoQuant using long reads. | Nat Biotechnol | 2023 |
| 36980891 | Chromosome-Length Assembly of the Baikal Seal (<i>Pusa sibirica</i>) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal. | Genes (Basel) | 2023 |
| 37405923 | Protocol for refining metagenomic binning with BinSPreader. | STAR Protoc | 2023 |
| 36386613 | MetaGT: A pipeline for <i>de novo</i> assembly of metatranscriptomes with the aid of metagenomic data. | Front Microbiol | 2022 |
| 36590388 | Editorial: Rising stars in Evolutionary and Genomic Microbiology: 2022. | Front Microbiol | 2022 |
| 36363763 | Agricultural Crops Grown in Laboratory Conditions on Chernevaya Taiga Soil Demonstrate Unique Composition of the Rhizosphere Microbiota. | Microorganisms | 2022 |
| 34829197 | Fungal Metagenome of Chernevaya Taiga Soils: Taxonomic Composition, Differential Abundance and Factors Related to Plant Gigantism. | J Fungi (Basel) | 2021 |
| 33833738 | Metagenomic Data Assembly - The Way of Decoding Unknown Microorganisms. | Front Microbiol | 2021 |
| 33833027 | Draft Genome Sequence of <i>Bordetella</i> sp. Strain FB-8, Isolated from a Former Uranium Mining Area in Germany. | Microbiol Resour Announc | 2021 |
| 32559359 | Using SPAdes De Novo Assembler. | Curr Protoc Bioinformatics | 2020 |
| 31696235 | MGnify: the microbiome analysis resource in 2020. | Nucleic Acids Res | 2020 |
| 33396320 | Genomic Variations in Drug Resistant <i>Mycobacterium tuberculosis</i> Strains Collected from Patients with Different Localization of Infection. | Antibiotics (Basel) | 2020 |
| 32703166 | CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. | BMC Bioinformatics | 2020 |
| 32703149 | Extending rnaSPAdes functionality for hybrid transcriptome assembly. | BMC Bioinformatics | 2020 |
| 32814545 | Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities. | BMC Bioinformatics | 2020 |
| 33008825 | Mixotrophic Iron-Oxidizing <i>Thiomonas</i> Isolates from an Acid Mine Drainage-Affected Creek. | Appl Environ Microbiol | 2020 |
| 32413137 | Metaviral SPAdes: assembly of viruses from metagenomic data. | Bioinformatics | 2020 |
| 30328692 | IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction. | J Comput Biol | 2019 |
| 31649081 | Draft Genome Sequence of Mn(II)-Oxidizing Bacterium <i>Oxalobacteraceae</i> sp. Strain AB_14. | Microbiol Resour Announc | 2019 |
| 31494669 | rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data. | Gigascience | 2019 |
| 31048319 | Plasmid detection and assembly in genomic and metagenomic data sets. | Genome Res | 2019 |
| 29406516 | Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. | Nat Biotechnol | 2018 |
| 30258408 | Autoprobiotics as an Approach for Restoration of Personalised Microbiota. | Front Microbiol | 2018 |
| 29979671 | Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. | Nat Biotechnol | 2018 |
| 28787424 | Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. | Nat Biotechnol | 2017 |
| 28196534 | Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. | Genome Biol | 2017 |
| 28408663 | Permanent Draft Genome Sequence of <i>Desulfurococcus amylolyticus</i> Strain Z-533<sup>T</sup>, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia. | Genome Announc | 2017 |
| 28174619 | Complete genome sequence of <i>Jiangella gansuensis</i> strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus <i>Jiangella</i> and source of new antibiotic compounds. | Stand Genomic Sci | 2017 |
| 29756047 | Complete Mitochondrial Genomes of Baikal Oilfishes (Perciformes: Cottoidei), Earth's Deepest-Swimming Freshwater Fishes. | Mitochondrial DNA B Resour | 2017 |
| 29093768 | Draft genome sequence of <i>Marinobacterium rhizophilum</i> CL-YJ9<sup>T</sup> (DSM 18822<sup>T</sup>), isolated from the rhizosphere of the coastal tidal-flat plant <i>Suaeda japonica</i>. | Stand Genomic Sci | 2017 |
| 28943998 | Draft genome sequence of <i>Dethiobacter alkaliphilus</i> strain AHT1<sup>T</sup>, a gram-positive sulfidogenic polyextremophile. | Stand Genomic Sci | 2017 |
| 26973616 | Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. | Front Microbiol | 2016 |
| 27617060 | Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34. | Stand Genomic Sci | 2016 |
| 27617057 | Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes. | Stand Genomic Sci | 2016 |
| 27811105 | Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds. | Genome Announc | 2016 |
| 27777652 | Draft genome of <i>Prochlorothrix hollandica</i> CCAP 1490/1<sup>T</sup> (CALU1027), the chlorophyll <i>a/b-</i>containing filamentous cyanobacterium. | Stand Genomic Sci | 2016 |
| 27535936 | Comparative genomics of biotechnologically important yeasts. | Proc Natl Acad Sci U S A | 2016 |
| 27294409 | Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles. | PLoS Genet | 2016 |
| 27466620 | plasmidSPAdes: assembling plasmids from whole genome sequencing data. | Bioinformatics | 2016 |
| 27313837 | High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T). | Stand Genomic Sci | 2016 |
| 27153654 | rnaQUAST: a quality assessment tool for de novo transcriptome assemblies. | Bioinformatics | 2016 |
| 27274784 | Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)). | Stand Genomic Sci | 2016 |
| 27274783 | Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005. | Stand Genomic Sci | 2016 |
| 26744606 | Complete genome sequence of Methanospirillum hungatei type strain JF1. | Stand Genomic Sci | 2016 |
| 26767091 | High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods. | Stand Genomic Sci | 2016 |
| 26767090 | Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland. | Stand Genomic Sci | 2016 |
| 25767232 | High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater. | Genome Announc | 2015 |
| 26566423 | High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture. | Stand Genomic Sci | 2015 |
| 26380642 | Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4. | Stand Genomic Sci | 2015 |
| 26380640 | High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea. | Stand Genomic Sci | 2015 |