Skip to Main Content

Author Details

Jaak Vilo
Institute of Computer Science, University of Tartu
1996
90
39
PMIDPaper TitleJournal TitlePublished Year
36745455Prevaccination Prevalence of Type-Specific Human Papillomavirus Infection by Grade of Cervical Cytology in Estonia.JAMA Netw Open2023
38058679Transforming Estonian health data to the Observational Medical Outcomes Partnership (OMOP) Common Data Model: lessons learned.JAMIA Open2023
37144459g:Profiler-interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update).Nucleic Acids Res2023
36966315Common clinical blood and urine biomarkers for ischemic stroke: an Estonian Electronic Health Records database study.Eur J Med Res2023
35287021The 1<sup>st</sup> year of the COVID-19 epidemic in Estonia: a population-based nationwide sequential/consecutive cross-sectional study.Public Health2022
35571357Trajectories: a framework for detecting temporal clinical event sequences from health data standardized to the Observational Medical Outcomes Partnership (OMOP) Common Data Model.JAMIA Open2022
36035246Omics-informed CNV calls reduce false-positive rates and improve power for CNV-trait associations.HGG Adv2022
35895263Functional Annotation of Custom Transcriptomes.Methods Mol Biol2022
32591764Publisher Correction: Building an international consortium for tracking coronavirus health status.Nat Med2020
32634117Healthspan pathway maps in <i>C. elegans</i> and humans highlight transcription, proliferation/biosynthesis and lipids.Aging (Albany NY)2020
30659741Comparison of variation in frequency for SNPs associated with asthma or liver disease between Estonia, HapMap populations and the 1000 genome project populations.Int J Immunogenet2019
31413325HENA, heterogeneous network-based data set for Alzheimer's disease.Sci Data2019
31066453g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update).Nucleic Acids Res2019
30420678Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.Eur J Hum Genet2019
30327539Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions.Genet Med2019
29264942MethSurv: a web tool to perform multivariable survival analysis using DNA methylation data.Epigenomics2018
29996797Validating Fitbit Zip for monitoring physical activity of children in school: a cross-sectional study.BMC Public Health2018
30428831funcExplorer: a tool for fast data-driven functional characterisation of high-throughput expression data.BMC Genomics2018
29449194Prostaglandin D2 Receptor DP1 Antibodies Predict Vaccine-induced and Spontaneous Narcolepsy Type 1: Large-scale Study of Antibody Profiling.EBioMedicine2018
28861084Autoantibody Repertoire in APECED Patients Targets Two Distinct Subgroups of Proteins.Front Immunol2017
29084032DosOpt: A Tool for Personalized Bayesian Dose Adjustment of Vancomycin in Neonates.Ther Drug Monit2017
28678847Comparing distributions of polygenic risk scores of type 2 diabetes and coronary heart disease within different populations.PLoS One2017
28634372DNA methylation changes in endometrium and correlation with gene expression during the transition from pre-receptive to receptive phase.Sci Rep2017
27098042g:Profiler-a web server for functional interpretation of gene lists (2016 update).Nucleic Acids Res2016
27802833Erratum to: DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns.Genome Biol2016
27187204seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data.Bioinformatics2016
26947176A Preclinical Model for ERα-Positive Breast Cancer Points to the Epithelial Microenvironment as Determinant of Luminal Phenotype and Hormone Response.Cancer Cell2016
25667547FUN-L: gene prioritization for RNAi screens.Bioinformatics2015
26286994Age-related profiling of DNA methylation in CD8+ T cells reveals changes in immune response and transcriptional regulator genes.Sci Rep2015
26913188GOsummaries: an R Package for Visual Functional Annotation of Experimental Data.F1000Res2015
26094770TRIB3 enhances cell viability during glucose deprivation in HEK293-derived cells by upregulating IGFBP2, a novel nutrient deficiency survival factor.Biochim Biophys Acta2015
25969447ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap.Nucleic Acids Res2015
24690455DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns.Genome Biol2014
25437054Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta.Epigenetics2014
25055923Comprehensive meta-analysis of microRNA expression using a robust rank aggregation approach.Methods Mol Biol2014
24943848Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation.Mol Biol Cell2014
24586062Estimating differential expression from multiple indicators.Nucleic Acids Res2014
23179753Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach.Arch Toxicol2013
24194720Qualitative modeling identifies IL-11 as a novel regulator in maintaining self-renewal in human pluripotent stem cells.Front Physiol2013
23445565Fast probabilistic file fingerprinting for big data.BMC Genomics2013
23413435A new way to protect privacy in large-scale genome-wide association studies.Bioinformatics2013
23225545Meta-analysis of microRNA expression in lung cancer.Int J Cancer2013
22074951Research resource: interactome of human embryo implantation: identification of gene expression pathways, regulation, and integrated regulatory networks.Mol Endocrinol2012
22720667m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence.Genome Biol2012
22445417Mechanisms of IFN-γ-induced apoptosis of human skin keratinocytes in patients with atopic dermatitis.J Allergy Clin Immunol2012
22659170Autoimmune regulator is acetylated by transcription coactivator CBP/p300.Exp Cell Res2012
22247279Robust rank aggregation for gene list integration and meta-analysis.Bioinformatics2012
22420508Gene expression signatures defining fundamental biological processes in pluripotent, early, and late differentiated embryonic stem cells.Stem Cells Dev2012
21297945G =â¿¿ MAT: linking transcription factor expression and DNA binding data.PLoS One2011
21646346MicroRNA expression profiles of human blood monocyte-derived dendritic cells and macrophages reveal miR-511 as putative positive regulator of Toll-like receptor 4.J Biol Chem2011
  • 1 - 50 of 90

Recommended Authors

Giuseppe Agapito
Data Analytics Research Center, University Magna Graecia of Catanzaro
Career Start Year 2012
Number of shared co-authors 1
Jan Baumbach
University of Hamburg
Career Start Year 2006
Number of shared co-authors 3
Haiyan Huang
Washington State University
Career Start Year 2004
Number of shared co-authors 6
Ricardo Z N V??ncio
University of Sao Paulo
Career Start Year 2003
Number of shared co-authors 6
F??tima Al-Shahrour
Spanish National Cancer Research Centre (CNIO)
Career Start Year 2003
Number of shared co-authors 3
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Career Start Year 2002
Number of shared co-authors 6
Xijin Ge
South Dakota State University
Career Start Year 2002
Number of shared co-authors 0
Chunlei Wu
The Scripps Research Institute
Career Start Year 2002
Number of shared co-authors 2
Michael Reich
university of california san diego
Career Start Year 2001
Number of shared co-authors 1
Olga G Troyanskaya
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Career Start Year 2001
Number of shared co-authors 3
Alberto Pascual-Montano
National Center for Biotechnology-CSIC
Career Start Year 2001
Number of shared co-authors 0
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Career Start Year 2000
Number of shared co-authors 6
Ana Conesa
Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
Career Start Year 2000
Number of shared co-authors 5
Petri T??r??nen
Institute of Biotechnology, University of Helsinki
Career Start Year 1999
Number of shared co-authors 6
Ralf Herwig
Max Planck Institute for Molecular Genetics
Career Start Year 1998
Number of shared co-authors 5
Blaz Zupan
University of Ljubljana
Career Start Year 1998
Number of shared co-authors 2
Lars Juhl Jensen
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Career Start Year 1998
Number of shared co-authors 5
Arthur Liberzon
Broad Institute of MIT and Harvard
Career Start Year 1996
Number of shared co-authors 0
Panayiotis V Benos
University of Florida
Career Start Year 1996
Number of shared co-authors 1
Ralf Zimmer
Ludwig-Maximilians-Universitat Munchen
Career Start Year 1995
Number of shared co-authors 2
Wolfgang Huber
Technische Universitat Munchen
Career Start Year 1995
Number of shared co-authors 18
Ron Shamir
Tel Aviv University
Career Start Year 1995
Number of shared co-authors 0
Finn Drabl??s
NTNU - Norwegian University of Science and Technology
Career Start Year 1994
Number of shared co-authors 5
Simon Kasif
Boston University
Career Start Year 1993
Number of shared co-authors 5
Jill P Mesirov
University of California San Diego
Career Start Year 1992
Number of shared co-authors 11
Robert Gentleman
Center for Computational Biomedicine, Harvard Medical School
Career Start Year 1991
Number of shared co-authors 9
Emmanuel Barillot
Institut Curie, Universite PSL
Career Start Year 1991
Number of shared co-authors 5
Michael F Ochs
The College of New Jersey
Career Start Year 1988
Number of shared co-authors 2
Joaqu??n Dopazo
Andalusian Public Foundation Progress and Health-FPS
Career Start Year 1977
Number of shared co-authors 13
Rainer Spang
University of Regensburg
Career Start Year 1969
Number of shared co-authors 0

Collaborators

Hedi Peterson
Institute of Computer Science, University of Tartu
Co-authored papers 21
Alvis Brazma
European Bioinformatics Institute
Co-authored papers 14
J??ri Reimand
Ontario Institute for Cancer Research
Co-authored papers 14
Andres Metspalu
Co-authored papers 10
Reedik Mägi
Co-authored papers 9
Lili Milani
Co-authored papers 6
Agapios Sachinidis
Institute of Neurophysiology, University of Cologne
Co-authored papers 5
J??rgen Hescheler
Institute of Neurophysiology, University of Cologne
Co-authored papers 5
Ugis Sarkans
Co-authored papers 5
Herbert Schulz
Clinic for Plastic, Otto von Guericke University
Co-authored papers 5
Michael Xavier Doss
BioMarin Pharmaceutical Inc.
Co-authored papers 4
Patrick Kemmeren
Princess Maxima Center for Pediatric Oncology
Co-authored papers 4
Johannes Winkler
Medical University of Vienna
Co-authored papers 3
Krista Fischer
Co-authored papers 3
Helen Parkinson
European Bioinformatics Institute
Co-authored papers 3
Jan Ellenberg
Institute of Child Health and Human Development
Co-authored papers 2
Christine Orengo
University College London, Institute of Structural and Molecular Biology
Co-authored papers 2
Jean-Karim H??rich??
University of California san francisco
Co-authored papers 2
Jonathan G Lees
University College London, Institute of Structural and Molecular Biology
Co-authored papers 2
Frank C P Holstege
Princess Maxima Center for Pediatric Oncology
Co-authored papers 2
Martin Krallinger
Spanish National Cancer Research Centre
Co-authored papers 2
Ioannis Xenarios
University of Lausanne
Co-authored papers 2
Frank Buchholz
University Hospital Carl Gustav Carus, Technische Universitat (TU) Dresden
Co-authored papers 2
Tõnu Esko
Co-authored papers 2
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 2
Toomas Haller
Co-authored papers 2
John Antonydas Gaspar
Research Centre, Ananda College
Co-authored papers 2
Jos?? M Fern??ndez
Hospital Universitario y Politecnico la Fe
Co-authored papers 2
Philippe Rocca-Serra
University of Oxford
Co-authored papers 2
Susanna-Assunta Sansone
Oxford e-Research Centre, University of Oxford
Co-authored papers 2
Release 1.2