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Author Details

Michael R Gryk
University of Illinois
1995
44
18
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36478084Biological Magnetic Resonance Data Bank.Nucleic Acids Res2023
35111815Merging NMR Data and Computation Facilitates Data-Centered Research.Front Mol Biosci2022
36312518Deconstructing the STAR File Format.Balisage Ser Markup Technol2021
33767737Embedding Analytics within the Curation of Scientific Workflows.Int J Digit Curation2020
30334020Semantic Mediation to Improve Reproducibility for Biomolecular NMR Analysis.Transform Digit Worlds (2018)2018
31061674Curating Scientific Workflows for Biomolecular Nuclear Magnetic Resonance Spectroscopy.Int J Digit Curation2018
29375158Workflows and Provenance: Toward Information Science Solutions for the Natural Sciences.Libr Trends2017
28445744NMRbox: A Resource for Biomolecular NMR Computation.Biophys J2017
26066803CONNJUR Workflow Builder: a software integration environment for spectral reconstruction.J Biomol NMR2015
26253947CONNJUR R: an annotation strategy for fostering reproducibility in bio-NMR-protein spectral assignment.J Biomol NMR2015
24352525Parser Combinators: a Practical Application for Generating Parsers for NMR Data.Proc Int Conf Inf Technol New Gener2013
22146221Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences.Nucleic Acids Res2012
25328913An Open-Source Sandbox for Increasing the Accessibility of Functional Programming to the Bioinformatics and Scientific Communities.Proc Int Conf Inf Technol New Gener2012
24634607A Pipeline Software Architecture for NMR Spectrum Data Translation.Comput Sci Eng2012
23236358Secondary structure, a missing component of sequence-based minimotif definitions.PLoS One2012
23029121Achieving high accuracy prediction of minimotifs.PLoS One2012
22955930In support of the BMRB.Nat Struct Mol Biol2012
21409563CONNJUR spectrum translator: an open source application for reformatting NMR spectral data.J Biomol NMR2011
22214925Iterative Development of an Application to Support Nuclear Magnetic Resonance Data Analysis of Proteins.Proc Int Conf Inf Technol New Gener2011
20625476Biomolecular NMR data analysis.Prog Nucl Magn Reson Spectrosc2010
20565705MimoSA: a system for minimotif annotation.BMC Bioinformatics2010
18978024Minimotif miner 2nd release: a database and web system for motif search.Nucleic Acids Res2009
19656955VENN, a tool for titrating sequence conservation onto protein structures.Nucleic Acids Res2009
19656396A proposed syntax for Minimotif Semantics, version 1.BMC Genomics2009
19273121Structural conservation of a short, functional, peptide-sequence motif.Front Biosci (Landmark Ed)2009
18353980Local knowledge helps determine protein structures.Proc Natl Acad Sci U S A2008
18669844Comment on "magnetic resonance spectroscopy identifies neural progenitor cells in the live human brain".Science2008
17263870Conceptual-level workflow modeling of scientific experiments using NMR as a case study.BMC Bioinformatics2007
17538627An automated tool for maximum entropy reconstruction of biomolecular NMR spectra.Nat Methods2007
17701276Automatic maximum entropy spectral reconstruction in NMR.J Biomol NMR2007
16489333Minimotif Miner: a tool for investigating protein function.Nat Methods2006
16328946High-performance exact algorithms for motif search.J Clin Monit Comput2005
15295113Delineation and analysis of the conceptual data model implied by the "IUPAC Recommendations for Biochemical Nomenclature".Protein Sci2004
15258144Identification of small molecule synthetic inhibitors of DNA polymerase beta by NMR chemical shift mapping.J Biol Chem2004
12527765Site-directed mutagenesis analysis of the structural interaction of the single-strand-break repair protein, X-ray cross-complementing group 1, with DNA polymerase beta.Nucleic Acids Res2003
118837861H, 13C and 15N resonance assignments for the perdeuterated 22 kD palm-thumb domain of DNA polymerase beta.J Biomol NMR2002
12467578Mapping of the interaction interface of DNA polymerase beta with XRCC1.Structure2002
11685238Solution structure of a viral DNA repair polymerase.Nat Struct Biol2001
10467102Solution structure of the single-strand break repair protein XRCC1 N-terminal domain.Nat Struct Biol1999
9671557Heteronuclear relaxation study of the PH domain of beta-spectrin: restriction of loop motions upon binding inositol trisphosphate.J Mol Biol1998
8568867AV77 hinge mutation stabilizes the helix-turn-helix domain of trp repressor.J Mol Biol1996
8762153Flexibility of DNA binding domain of trp repressor required for recognition of different operator sequences.Protein Sci1996
7670756Investigation of protein amide-proton exchange by 1H longitudinal spin relaxation.J Magn Reson B1995
7877180Solution dynamics of the trp repressor: a study of amide proton exchange by T1 relaxation.J Mol Biol1995
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Collaborators

Mark W Maciejewski
University of Connecticut School of Medicine
Co-authored papers 16
Jeffrey C Hoch
University of Connecticut Health Center
Co-authored papers 9
Bertram Ludäscher
Co-authored papers 2
Eldon L Ulrich
University of Wisconsin-Madison
Co-authored papers 2
Hartmut Oschkinat
Leibniz-Forschungsinstitut fur Molekulare Pharmakologie
Co-authored papers 2
Toshimichi Fujiwara
Institute for Protein Research, Osaka University
Co-authored papers 2
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Matthew P Crump
University of Bristol
Co-authored papers 1
Alexander P Golovanov
The University of Manchester
Co-authored papers 1
David A Case
Rutgers University
Co-authored papers 1
Oliver F Lange
Center for Integrated Protein Science, Technische Universitat Munchen
Co-authored papers 1
Gordon C K Roberts
Leicester Institute of Structural and Chemical Biology, University of Leicester
Co-authored papers 1
Josep Rizo
University of Texas Southwestern Medical Center
Co-authored papers 1
Mike P Williamson
The University of Sheffield
Co-authored papers 1
Lu-Yun Lian
Institute of Systems, The University of Liverpool
Co-authored papers 1
Igor L Barsukov
Institute of Integrative Biology, University of Liverpool
Co-authored papers 1
David E Shaw
Columbia University
Co-authored papers 1
Ad Bax
National Institutes of Health
Co-authored papers 1
Patrick C A van der Wel
Zernike Institute for Advanced Materials, University of Groningen
Co-authored papers 1
David Middleton
Co-authored papers 1
Ioannis Vakonakis
University of Oxford
Co-authored papers 1
Thomas A Frenkiel
The Medical Research Council Biomedical NMR Centre, The Francis Crick Institute
Co-authored papers 1
Ernest D Laue
University of Cambridge
Co-authored papers 1
Gordon S Rule
Carnegie Mellon University
Co-authored papers 1
Stephen Matthews
Imperial College London
Co-authored papers 1
Chien Ho
Carnegie Mellon University
Co-authored papers 1
Pei Tang
Sichuan University
Co-authored papers 1
Joern Werner
Co-authored papers 1
Paul C Driscoll
The Francis Crick Institute
Co-authored papers 1
Shigeyuki Yokoyama
Shinshu University School of Medicine
Co-authored papers 1
Release 1.2