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Author Details

Jonathan E Rubin
Center for the Neural Basis of Cognition
2000
108
34
PMIDPaper TitleJournal TitlePublished Year
36653544A spiking computational model for striatal cholinergic interneurons.Brain Struct Funct2023
37818943Competing neural representations of choice shape evidence accumulation in humans.Elife2023
37173346Modular architecture and resilience of structural covariance networks in first-episode antipsychotic-naive psychoses.Sci Rep2023
37270711Rigorous Mapping of Data to Qualitative Properties of Parameter Values and Dynamics: A Case Study on a Two-Variable Lotka-Volterra System.Bull Math Biol2023
37037042Sensitivity to Control Signals in Triphasic Rhythmic Neural Systems: A Comparative Mechanistic Analysis via Infinitesimal Local Timing Response Curves.Neural Comput2023
37166374Threshold Selection for Brain Connectomes.Brain Connect2023
37067661Slow negative feedback enhances robustness of square-wave bursting.J Comput Neurosci2023
36965361Global network disorganization underlying psychosis high risk states.Schizophr Res2023
34757193A data-driven model of the role of energy in sepsis.J Theor Biol2022
35737720Identifying control ensembles for information processing within the cortico-basal ganglia-thalamic circuit.PLoS Comput Biol2022
35380537Putting the theory into 'burstlet theory' with a biophysical model of burstlets and bursts in the respiratory preBötzinger complex.Elife2022
35796425Predictions and experimental tests of a new biophysical model of the mammalian respiratory oscillator.Elife2022
37266768Transmission of delta band (0.5-4 Hz) oscillations from the globus pallidus to the substantia nigra pars reticulata in dopamine depletion.J Comput Neurosci2022
36285439A model for the collective synchronization of flashing in <i>Photinus carolinus</i>.J R Soc Interface2022
34906884Structural covariance networks in schizophrenia: A systematic review Part I.Schizophr Res2022
34902650Structural covariance networks in schizophrenia: A systematic review Part II.Schizophr Res2022
34704174Dynamics of ramping bursts in a respiratory neuron model.J Comput Neurosci2022
32302439The credit assignment problem in cortico-basal ganglia-thalamic networks: A review, a problem and a possible solution.Eur J Neurosci2021
34951589Dynamic decision policy reconfiguration under outcome uncertainty.Elife2021
32399614Paying Our Dues: The Role of Professional Societies in the Evolution of Mathematical Biology Education.Bull Math Biol2020
33048920Neural activity during a simple reaching task in macaques is counter to gating and rebound in basal ganglia-thalamic communication.PLoS Biol2020
33289879The roles of ascending sensory signals and top-down central control in the entrainment of a locomotor CPG.Biol Cybern2020
32579421Delta oscillations are a robust biomarker of dopamine depletion severity and motor dysfunction in awake mice.J Neurophysiol2020
32894224The effects of chloride dynamics on substantia nigra pars reticulata responses to pallidal and striatal inputs.Elife2020
32357647Complex bursting dynamics in an embryonic respiratory neuron model.Chaos2020
30908648Reduced computational modelling of Kölliker-Fuse contributions to breathing patterns in Rett syndrome.J Physiol2019
30149010Mathematical modeling of energy consumption in the acute inflammatory response.J Theor Biol2019
31469828Effects of persistent sodium current blockade in respiratory circuits depend on the pharmacological mechanism of action and network dynamics.PLoS Comput Biol2019
31233499Correction: From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses.PLoS Comput Biol2019
31361738Robustness of respiratory rhythm generation across dynamic regimes.PLoS Comput Biol2019
31060045Reward-driven changes in striatal pathway competition shape evidence evaluation in decision-making.PLoS Comput Biol2019
28978767State-dependent rhythmogenesis and frequency control in a half-center locomotor CPG.J Neurophysiol2018
29882174Numerical optimization of coordinated reset stimulation for desynchronizing neuronal network dynamics.J Comput Neurosci2018
30563537A mathematical model of neuroinflammation in severe clinical traumatic brain injury.J Neuroinflammation2018
29448375Natural extension of fast-slow decomposition for dynamical systems.Phys Rev E2018
27424950Multi-timescale systems and fast-slow analysis.Math Biosci2017
28589465Timescales and Mechanisms of Sigh-Like Bursting and Spiking in Models of Rhythmic Respiratory Neurons.J Math Neurosci2017
28888856Computational models of basal ganglia dysfunction: the dynamics is in the details.Curr Opin Neurobiol2017
28009109Computational models of the neural control of breathing.Wiley Interdiscip Rev Syst Biol Med2017
27798630The spatial structure of correlated neuronal variability.Nat Neurosci2017
26974345Mixed-mode oscillations and population bursting in the pre-Bötzinger complex.Elife2016
33134139Modeling and Hemofiltration Treatment of Acute Inflammation.Processes (Basel)2016
27194335Pallidostriatal Projections Promote β Oscillations in a Dopamine-Depleted Biophysical Network Model.J Neurosci2016
27491968Multiple timescale mixed bursting dynamics in a respiratory neuron model.J Comput Neurosci2016
27490251The Representation of Prediction Error in Auditory Cortex.PLoS Comput Biol2016
26705843Principal components derived from CSF inflammatory profiles predict outcome in survivors after severe traumatic brain injury.Brain Behav Immun2016
25740532Role of the indirect pathway of the basal ganglia in perceptual decision making.J Neurosci2015
26185063Conditions for Multi-functionality in a Rhythm Generating Network Inspired by Turtle Scratching.J Math Neurosci2015
26122824A Boundary Value Approach to Optimization with an Application to Salmonella Competition.Bull Math Biol2015
24051279Axonal and synaptic failure suppress the transfer of firing rate oscillations, synchrony and information during high frequency deep brain stimulation.Neurobiol Dis2014
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Collaborators

G Clermont
University of Pittsburgh
Co-authored papers 12
Yoram Vodovotz
University of Pittsburgh
Co-authored papers 11
George Ermentrout
University of Pittsburgh
Co-authored papers 9
Judy Day
University of Tennessee
Co-authored papers 6
Silvia Daun
Institute of Neuroscience and Medicine (INM-3)
Co-authored papers 5
Carson C Chow
National Institute of Diabetes and Digestive and Kidney Diseases
Co-authored papers 5
Gregory Constantine
University of Pittsburgh
Co-authored papers 3
John Bartels
Co-authored papers 3
Robert S Turner
Co-authored papers 3
David Swigon
University of Pittsburgh
Co-authored papers 3
Constantino M Lagoa
The Pennsylvania State University, University Park
Co-authored papers 3
Gary An
University of Vermont
Co-authored papers 2
Ryan M Levy
University of Pittsburgh Medical Center
Co-authored papers 2
Sven Zenker
University Hospital Bonn
Co-authored papers 2
Angela Reynolds
Virginia Commonwealth University
Co-authored papers 2
Mitchell P Fink
University of Pittsburgh School of Medicine
Co-authored papers 2
Anirban Roy
Department of Pharmacological and Pharmaceutical Sciences, University of Houston
Co-authored papers 2
Ivan Ramirez-Zuniga
University of Pittsburgh
Co-authored papers 2
Robert S Parker
University of Pittsburgh
Co-authored papers 2
Timothy R Billiar
University of Pittsburgh
Co-authored papers 2
Jose M Prince
Cincinnati Children's Hospital Medical Center
Co-authored papers 2
Joyce Wei
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
Robert H Squires
University of Pittsburgh School of Medicine, UPMC Children's Hospital of Pittsburgh
Co-authored papers 1
Isabella E Valenti
University of Pittsburgh
Co-authored papers 1
Qi Mi
University of Pittsburgh
Co-authored papers 1
Thomas Rimmel??
Edouard Herriot Hospital
Co-authored papers 1
Rukmini Kumar
Vantage Research Inc.
Co-authored papers 1
John M Kane
Roswell Park Comprehensive Cancer Center
Co-authored papers 1
Patrick M Kochanek
University of Pittsburgh School of Medicine
Co-authored papers 1
Arie Baratt
Oregon Health & Science University
Co-authored papers 1
Release 1.2