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Author Details

Jonathan Foox
2015
60
20
PMIDPaper TitleJournal TitlePublished Year
36736318IDH2 and TET2 mutations synergize to modulate T Follicular Helper cell functional interaction with the AITL microenvironment.Cancer Cell2023
37886447Viral activation and ecological restructuring characterize a microbiome axis of spaceflight-associated immune activation.Res Sq2023
37782774Resistance to PRMT5 Targeted Therapy in Mantle Cell Lymphoma.2023
37556555Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts.Sci Transl Med2023
37859800Elevated A-to-I RNA editing in COVID-19 infected individuals.NAR Genom Bioinform2023
36652477Distinct and opposite effects of leukemogenic <i>Idh</i> and <i>Tet2</i> mutations in hematopoietic stem and progenitor cells.Proc Natl Acad Sci U S A2023
37398062Geospatially-resolved public-health surveillance via wastewater sequencing.medRxiv2023
37267517PRMT5 supports multiple oncogenic pathways in mantle cell lymphoma.Blood2023
35074468Betacoronavirus-specific alternate splicing.Genomics2022
36398131Relationships between SARS-CoV-2 in Wastewater and COVID-19 Clinical Cases and Hospitalizations, with and without Normalization against Indicators of Human Waste.ACS ES T Water2022
36544228Microbiome and metagenomic analysis of Lake Hillier Australia reveals pigment-rich polyextremophiles and wide-ranging metabolic adaptations.2022
34980216Assessing reproducibility of inherited variants detected with short-read whole genome sequencing.Genome Biol2022
35233572TARGETED DOWN REGULATION OF CORE MITOCHONDRIAL GENES DURING SARS-COV-2 INFECTION.bioRxiv2022
35233546System-wide transcriptome damage and tissue identity loss in COVID-19 patients.Cell Rep Med2022
35205919Genomic Characterization of the Titan-like Cell Producing <i>Naganishia tulchinskyi</i>, the First Novel Eukaryote Isolated from the International Space Station.J Fungi (Basel)2022
34635840Author Correction: Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study.Nat Biotechnol2021
35837267Comparative Analysis of Single-Cell RNA Sequencing Platforms and Methods.2021
34230929Betacoronavirus-specific alternate splicing.bioRxiv2021
33536218A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood.Sci Adv2021
33948587The Great Deceiver: miR-2392's Hidden Role in Driving SARS-CoV-2 Infection.bioRxiv2021
33780969The spatial landscape of lung pathology during COVID-19 progression.Nature2021
33567281Clonal hematopoiesis before, during, and after human spaceflight.Cell Rep2021
33602693SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission.Genome Res2021
33758858Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps.bioRxiv2021
33712587Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.Nat Commun2021
33974080Investigation of product-derived lymphoma following infusion of piggyBac-modified CD19 chimeric antigen receptor T cells.Blood2021
33863366A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency.Genome Biol2021
33863344Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.Genome Biol2021
33319166Transcriptional response modules characterize IL-1β and IL-6 activity in COVID-19.iScience2021
34624208Role of miR-2392 in driving SARS-CoV-2 infection.Cell Rep2021
34504347Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.Nat Biotechnol2021
34504351Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study.Nat Biotechnol2021
35027877Molecular Characterization of Increased Amplicon Lengths in SARS-CoV-2 Reverse Transcription Loop-Mediated Isothermal Amplification Assays.2021
34663425DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation.Genome Biol2021
34949218Author Correction: The SEQC2 epigenomics quality control (EpiQC) study.Genome Biol2021
34822785Fundamental Biological Features of Spaceflight: Advancing the Field to Enable Deep-Space Exploration.Cell2021
34872606The SEQC2 epigenomics quality control (EpiQC) study.Genome Biol2021
34806083Epigenetic Forensics for Suspect Identification and Age Prediction.Forensic Genom2021
32561500Identification of Radioresponsive Genes in Esophageal Cancer from Longitudinal and Single Cell Exome Sequencing.Int J Radiat Oncol Biol Phys2020
32492404Illuminating Genetic Mysteries of the Dead Sea Scrolls.Cell2020
33299992Transcriptional response modules characterise IL-1β and IL-6 activity in COVID-19.bioRxiv2020
33242417Comprehensive Multi-omics Analysis Reveals Mitochondrial Stress as a Central Biological Hub for Spaceflight Impact.Cell2020
33242416Fundamental Biological Features of Spaceflight: Advancing the Field to Enable Deep-Space Exploration.Cell2020
33242411Temporal Telomere and DNA Damage Responses in the Space Radiation Environment.Cell Rep2020
33242405Clonal Hematopoiesis Before, During, and After Human Spaceflight.Cell Rep2020
32747830Immune complement and coagulation dysfunction in adverse outcomes of SARS-CoV-2 infection.Nat Med2020
32637955Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission.bioRxiv2020
32511494Identification of Immune complement function as a determinant of adverse SARS-CoV-2 infection outcome.medRxiv2020
32511352Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions.bioRxiv2020
30953547Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.Genome Biol2019
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