Author details

Full Name

Dmitri D Pervouchine

Affiliation

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37295923	RNA in situ conformation sequencing reveals novel long-range RNA structures with impact on splicing.		2023
38047033	Long-range RNA structures in the human transcriptome beyond evolutionarily conserved regions.		2023
36912101	Tissue-specific regulation of gene expression via unproductive splicing.	Nucleic Acids Res	2023
37153509	RNAcontacts: A Pipeline for Predicting Contacts from RNA Proximity Ligation Assays.		2023
37260513	Transcriptome sequencing suggests that pre-mRNA splicing counteracts widespread intronic cleavage and polyadenylation.		2023
35441045	Tandem Exon Duplications Expanding the Alternative Splicing Repertoire.	Acta Naturae	2022
35587924	Transcriptome analysis reveals high tumor heterogeneity with respect to re-activation of stemness and proliferation programs.	PLoS ONE	2022
33330934	Multiple competing RNA structures dynamically control alternative splicing in the human ATE1 gene.	Nucleic Acids Research	2021
33826604	An extended catalogue of tandem alternative splice sites in human tissue transcriptomes.	PLoS Computational Biology	2021
33863890	Conserved long-range base pairings are associated with pre-mRNA processing of human genes.	Nat Commun	2021
32759341	A limited set of transcriptional programs define major cell types.	Genome Res	2020
31832877	Urinary biomarkers of latent inflammation and fibrosis in children with vesicoureteral reflux.	International Urology and Nephrology	2020
31102674	Circular exonic RNAs: When RNA structure meets topology.	Biochimica et Biophysica Acta - Gene Regulatory Mechanisms	2019
31814998	Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in <i>SCN1A</i>.	NPJ Genom Med	2019
30916337	Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay.	Nucleic Acids Res	2019
29440659	The effects of death and post-mortem cold ischemia on human tissue transcriptomes.	Nat Commun	2018
29053704	Hypoxic renal injury in newborns with abdominal compartment syndrome (clinical and experimental study).	Pediatric Research	2018
30018239	An Evolutionary Mechanism for the Generation of Competing RNA Structures Associated with Mutually Exclusive Exons.	Genes	2018
29914113	Towards Long-Range RNA Structure Prediction in Eukaryotic Genes.	Genes	2018
27716375	Erratum to: A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
26936433	Urinary cytokines as markers of latent inflammation in children with chronic pyelonephritis and anorectal malformations.	Journal of Pediatric Urology	2016
27391956	Gene-specific patterns of expression variation across organs and species.	Genome Biol	2016
27107712	A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
27215799	Erratum to: A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
26110515	Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction.	BMC Genomics	2015
25582907	Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.	Nat Commun	2015
25954002	Human genomics. The human transcriptome across tissues and individuals.	Science	2015
25164755	Comparative analysis of the transcriptome across distant species.	Nature	2014
25409824	A comparative encyclopedia of DNA elements in the mouse genome.	Nature	2014
25142064	IRBIS: a systematic search for conserved complementarity.	RNA	2014
23172860	Intron-centric estimation of alternative splicing from RNA-seq data.	Bioinformatics	2013
22128342	Evidence for widespread association of mammalian splicing and conserved long-range RNA structures.	RNA	2012
19465384	Modulation of alternative splicing by long-range RNA structures in Drosophila.	Nucleic Acids Res	2009
16999573	Low-dimensional maps encoding dynamics in entorhinal cortex and hippocampus.	Neural Computation	2006
16819804	RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA.	J Bioinform Comput Biol	2006
16565217	Neuronal metabolism governs cortical network response state.	Proceedings of the National Academy of Sciences of the United States of America	2006
15857967	Slow and fast inhibition and an H-current interact to create a theta rhythm in a model of CA1 interneuron network.	Journal of Neurophysiology	2005
15208640	Engineered riboregulators enable post-transcriptional control of gene expression.	Nature Biotechnology	2004
15706495	IRIS: intermolecular RNA interaction search.	Genome informatics. International Conference on Genome Informatics	2004
12711694	On the normalization of RNA equilibrium free energy to the length of the sequence.	Nucleic Acids Res	2003