Author details

Full Name

Pieter Mestdagh

Affiliation

ORCID

Career Start Year

2008

Papers

165

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37528411	Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes.	Genome Biol	2023
37202906	Benchmarking blood collection tubes and processing intervals for extracellular vesicle performance metrics.		2023
36890441	Blocking Abundant RNA Transcripts by High-Affinity Oligonucleotides during Transcriptome Library Preparation.		2023
36707637	Direct lysis of 3D cell cultures for RT-qPCR gene expression quantification.		2023
37389884	mTOR Inhibition Enhances Delivery and Activity of Antisense Oligonucleotides in Uveal Melanoma Cells.		2023
36683916	Longitudinal evaluation of serum microRNAs as biomarkers for neuroblastoma burden and therapeutic p53 reactivation.		2023
36990512	Artifacts and biases of the reverse transcription reaction in RNA sequencing.		2023
35087108	Orthogonal proteomics methods to unravel the HOTAIR interactome.	Scientific Reports	2022
35459775	Evaluation of efficiency and sensitivity of 1D and 2D sample pooling strategies for SARS-CoV-2 RT-qPCR screening purposes.	Scientific Reports	2022
36304262	CiLiQuant: Quantification of RNA Junction Reads Based on Their Circular or Linear Transcript Origin.		2022
35535560	A 3'-end capture sequencing method for high-throughput targeted gene expression profiling.	Biotechnology Journal	2022
36253785	IL-10 producing regulatory B cells are decreased in blood from smokers and COPD patients.	Respiratory Research	2022
35047007	Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop.	Front Genet	2022
34984553	Transient nuclear lamin A/C accretion aids in recovery from vapor nanobubble-induced permeabilisation of the plasma membrane.	Cellular and Molecular Life Sciences	2022
34508176	The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival.	Oncogene	2022
35246486	Unlocking the secrets of long non-coding RNAs in asthma.	Thorax	2022
35207446	Reliable and Scalable SARS-CoV-2 qPCR Testing at a High Sample Throughput: Lessons Learned from the Belgian Initiative.	Life (Basel)	2022
34998954	miR-99b-5p, miR-380-3p, and miR-485-3p are novel chemosensitizing miRNAs in high-risk neuroblastoma.	Mol Ther	2022
34998206	RNA biomarkers from proximal liquid biopsy for diagnosis of ovarian cancer.	Neoplasia	2022
34470578	Custom long non-coding RNA capture enhances detection sensitivity in different human sample types.	RNA Biology	2021
33962592	Checkpoint inhibition in combination with an immunoboost of external beam radiotherapy in solid tumors (CHEERS): study protocol for a phase 2, open-label, randomized controlled trial.	BMC Cancer	2021
33937877	Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls.	STAR Protocols	2021
34140680	The RNA Atlas expands the catalog of human non-coding RNAs.	Nat Biotechnol	2021
34358676	Evaluating Diagnostic Accuracy of Saliva Sampling Methods for Severe Acute Respiratory Syndrome Coronavirus 2 Reveals Differential Sensitivity and Association with Viral Load.	Journal of Molecular Diagnostics	2021
34183863	Publisher Correction: The RNA Atlas expands the catalog of human non-coding RNAs.	Nat Biotechnol	2021
33257015	Candidate RNA biomarkers in biofluids for early diagnosis of ovarian cancer: A systematic review.	Gynecologic Oncology	2021
33310889	Targeted Therapy of <i>TERT</i>-Rearranged Neuroblastoma with BET Bromodomain Inhibitor and Proteasome Inhibitor Combination Therapy.	Clin Cancer Res	2021
33074045	Genome-wide study of the effect of blood collection tubes on the cell-free DNA methylome.	Epigenetics	2021
33336840	Recurrent chromosomal imbalances provide selective advantage to human embryonic stem cells under enhanced replicative stress conditions.	Genes Chromosomes Cancer	2021
34725485	MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity.	Nat Methods	2021
34429857	Robust sequential biophysical fractionation of blood plasma to study variations in the biomolecular landscape of systemically circulating extracellular vesicles across clinical conditions.	Journal of Extracellular Vesicles	2021
34818056	A microRNA-21-mediated SATB1/S100A9/NF-ÎºB axis promotes chronic obstructive pulmonary disease pathogenesis.	Science Translational Medicine	2021
34359863	The MicroRNA Landscape of Acute Beta Cell Destruction in Type 1 Diabetic Recipients of Intraportal Islet Grafts.	Cells	2021
33159064	Benchmarking of cell type deconvolution pipelines for transcriptomics data.	Nature Communications	2020
32255245	Distinct Notch1 and BCL11B requirements mediate human Î³Î´/Î±Î² T cell development.	EMBO Reports	2020
31904400	Vapor nanobubble is the more reliable photothermal mechanism for inducing endosomal escape of siRNA without disturbing cell homeostasis.	Journal of Controlled Release	2020
32066370	SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups.	BMC Bioinformatics	2020
32240908	SPECT/CT-guided elective nodal irradiation for head and neck cancer is oncologically safe and less toxic: A potentially practice-changing approach.	Radiotherapy and Oncology	2020
31602525	Disease course after the first recurrence of head and neck squamous cell carcinoma following (chemo)radiation.	European Archives of Oto-Rhino-Laryngology	2020
32788394	When DNA gets in the way: A cautionary note for DNA contamination in extracellular RNA-seq studies.	Proceedings of the National Academy of Sciences of the United States of America	2020
33268785	Author Correction: Benchmarking of cell type deconvolution pipelines for transcriptomics data.	Nature Communications	2020
31311990	Author Correction: Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes.	Sci Rep	2019
31690716	The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35.	Nat Commun	2019
31727019	Mapping of sentinel lymph node drainage using SPECT/CT to tailor elective nodal irradiation in head and neck cancer patients (SUSPECT-2): a single-center prospective trial.	BMC Cancer	2019
31772251	Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles.	Scientific Reports	2019
30461116	Long noncoding RNA expression profiling in cancer: Challenges and opportunities.	Genes Chromosomes and Cancer	2019
30087057	SPECT/CT-guided elective nodal irradiation for head and neck cancer: Estimation of clinical benefits using NTCP models.	Radiotherapy and Oncology	2019
30371849	LNCipedia 5: towards a reference set of human long non-coding RNAs.	Nucleic Acids Research	2019
30952905	Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes.	Sci Rep	2019
31061901	Incidence of contralateral regional failure in the electively irradiated contralateral neck of patients with head and neck squamous cell carcinoma.	Clinical and Translational Radiation Oncology	2019