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Author Details

Saurabh Sinha
Georgia Institute of Technology
2000
113
40
PMIDPaper TitleJournal TitlePublished Year
36747718Intracellular Spatial Transcriptomic Analysis Toolkit (InSTAnT).Res Sq2023
37596606Influenza A virus infection disrupts oligodendrocyte homeostasis and alters the myelin lipidome in the adult mouse.J Neuroinflammation2023
37264201Single-cell dissection of aggression in honeybee colonies.Nat Ecol Evol2023
36747718Intracellular Spatial Transcriptomic Analysis Toolkit (InSTAnT).Res Sq2023
37163135CIMLA: Interpretable AI for inference of differential causal networks.ArXiv2023
37596606Influenza A virus infection disrupts oligodendrocyte homeostasis and alters the myelin lipidome in the adult mouse.J Neuroinflammation2023
37264201Single-cell dissection of aggression in honeybee colonies.Nat Ecol Evol2023
37163135CIMLA: Interpretable AI for inference of differential causal networks.ArXiv2023
35192674An epigenomic shift in amygdala marks the transition to maternal behaviors in alloparenting virgin female mice.PLoS One2022
35569056The Liver X Receptor Is Selectively Modulated to Differentially Alter Female Mammary Metastasis-associated Myeloid Cells.Endocrinology2022
35465052Thermodynamics-based modeling reveals regulatory effects of indirect transcription factor-DNA binding.iScience2022
35192674An epigenomic shift in amygdala marks the transition to maternal behaviors in alloparenting virgin female mice.PLoS One2022
35465052Thermodynamics-based modeling reveals regulatory effects of indirect transcription factor-DNA binding.iScience2022
35569056The Liver X Receptor Is Selectively Modulated to Differentially Alter Female Mammary Metastasis-associated Myeloid Cells.Endocrinology2022
33413550An integrated multi-omics approach to identify regulatory mechanisms in cancer metastatic processes.Genome Biol2021
33558504Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study.NPJ Syst Biol Appl2021
34313777VarSAn: associating pathways with a set of genomic variants using network analysis.Nucleic Acids Res2021
33413550An integrated multi-omics approach to identify regulatory mechanisms in cancer metastatic processes.Genome Biol2021
34508359Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks.Nucleic Acids Res2021
33558504Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study.NPJ Syst Biol Appl2021
34508359Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks.Nucleic Acids Res2021
34313777VarSAn: associating pathways with a set of genomic variants using network analysis.Nucleic Acids Res2021
32641077Superior breast cancer metastasis risk stratification using an epithelial-mesenchymal-amoeboid transition gene signature.Breast Cancer Res2020
31971940Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform.PLoS Biol2020
31967990Tissue-guided LASSO for prediction of clinical drug response using preclinical samples.PLoS Comput Biol2020
31900360Global shape of Toll activation is determined by <i>wntD</i> enhancer properties.Proc Natl Acad Sci U S A2020
33205133Uncovering Effective Explanations for Interactive Genomic Data Analysis.Patterns (N Y)2020
32871105SERGIO: A Single-Cell Expression Simulator Guided by Gene Regulatory Networks.Cell Syst2020
32641077Superior breast cancer metastasis risk stratification using an epithelial-mesenchymal-amoeboid transition gene signature.Breast Cancer Res2020
33350385Individual differences in honey bee behavior enabled by plasticity in brain gene regulatory networks.Elife2020
32661177Behavior-related gene regulatory networks: A new level of organization in the brain.Proc Natl Acad Sci U S A2020
31967990Tissue-guided LASSO for prediction of clinical drug response using preclinical samples.PLoS Comput Biol2020
31900360Global shape of Toll activation is determined by <i>wntD</i> enhancer properties.Proc Natl Acad Sci U S A2020
31971940Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform.PLoS Biol2020
33205133Uncovering Effective Explanations for Interactive Genomic Data Analysis.Patterns (N Y)2020
33350385Individual differences in honey bee behavior enabled by plasticity in brain gene regulatory networks.Elife2020
32661177Behavior-related gene regulatory networks: A new level of organization in the brain.Proc Natl Acad Sci U S A2020
32871105SERGIO: A Single-Cell Expression Simulator Guided by Gene Regulatory Networks.Cell Syst2020
30504231Global analysis of osteosarcoma lipidomes reveal altered lipid profiles in metastatic versus nonmetastatic cells.J Lipid Res2019
31732668Label-free visualization and characterization of extracellular vesicles in breast cancer.Proc Natl Acad Sci U S A2019
31723141Towards a fully automated algorithm driven platform for biosystems design.Nat Commun2019
31872065Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology.NPJ Precis Oncol2019
30504231Global analysis of osteosarcoma lipidomes reveal altered lipid profiles in metastatic versus nonmetastatic cells.J Lipid Res2019
29968347Cross-species systems analysis of evolutionary toolkits of neurogenomic response to social challenge.Genes Brain Behav2019
31221127A subtype of oral, laryngeal, esophageal, and lung, squamous cell carcinoma with high levels of TrkB-T1 neurotrophin receptor mRNA.BMC Cancer2019
31114856The Role of Chromatin Accessibility in cis-Regulatory Evolution.Genome Biol Evol2019
30893303Identification of pathways associated with chemosensitivity through network embedding.PLoS Comput Biol2019
31362726Mechanistic interpretation of non-coding variants for discovering transcriptional regulators of drug response.BMC Biol2019
31732668Label-free visualization and characterization of extracellular vesicles in breast cancer.Proc Natl Acad Sci U S A2019
31872065Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology.NPJ Precis Oncol2019
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Collaborators

Gene E Robinson
University of Illinois at Urbana-Champaign
Co-authored papers 16
Scot A Wolfe
Co-authored papers 7
Martin Tompa
Co-authored papers 6
Liewei Wang
Mayo Clinic
Co-authored papers 5
Jaebum Kim
Konkuk University
Co-authored papers 5
Sandra L Rodriguez-Zas
University of Illinois at Urbana-Champaign
Co-authored papers 4
Sriram Chandrasekaran
University of Michigan ann arbor
Co-authored papers 4
Laura G Sloofman
Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Susan E Celniker
Lawrence Berkeley National Laboratory
Co-authored papers 3
Hugh M Robertson
University of Illinois at Champaign-Urbana
Co-authored papers 3
Stephen A Boppart
Beckman Institute for Advanced Science and Technology.
Co-authored papers 3
Jun S Song
University of Illinois at Urbana-Champaign
Co-authored papers 2
Stephen M Hewitt
Center for Cancer Research, National Cancer Institute
Co-authored papers 2
Jay D Evans
USDA-ARS Bee Research Laboratory
Co-authored papers 2
Seth A Ament
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 2
Richard M Weinshilboum
Mayo Clinic
Co-authored papers 2
Frank Hauser
University of Copenhagen, Universitetsparken 15
Co-authored papers 2
Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 2
Joshua D Gibson
University of California berkeley
Co-authored papers 2
Sheng Zhong
Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University
Co-authored papers 2
Zil?? Luz Paulino Sim??es
Faculdade de Medicina de Ribeirao Preto, Universidade de Sao Paulo
Co-authored papers 2
Lihua Julie Zhu
Co-authored papers 2
John H Werren
University of Rochester
Co-authored papers 2
Evgeny M Zdobnov
University of Geneva Medical School
Co-authored papers 2
Reed M Johnson
The Ohio State University
Co-authored papers 2
Edward W Huang
University of Illinois at Urbana-Champaign
Co-authored papers 2
Francis M F Nunes
Michigan State University
Co-authored papers 2
Chengxiang Zhai
University of Illinois Urbana-Champaign
Co-authored papers 2
Eran Segal
Weizmann Institute of Science
Co-authored papers 2
Cornelis J P Grimmelikhuijzen
University of Copenhagen, Universitetsparken 15
Co-authored papers 2
Release 1.2