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Author Details

Shruthi Viswanath
National Center for Biological Sciences, Tata Institute of Fundamental Research
2013
18
12
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37398295The molecular architecture of the desmosomal outer dense plaque by integrative structural modeling.bioRxiv2024
37398295The molecular architecture of the desmosomal outer dense plaque by integrative structural modeling.bioRxiv2024
36153346Identification of potential modulators of IFITM3 by in-silico modeling and virtual screening.Sci Rep2022
36040254Molecular architecture of nucleosome remodeling and deacetylase sub-complexes by integrative structure determination.Protein Sci2022
36153346Identification of potential modulators of IFITM3 by in-silico modeling and virtual screening.Sci Rep2022
35723541PrISM: precision for integrative structural models.Bioinformatics2022
35723541PrISM: precision for integrative structural models.Bioinformatics2022
36040254Molecular architecture of nucleosome remodeling and deacetylase sub-complexes by integrative structure determination.Protein Sci2022
33166013Using Integrative Modeling Platform to compute, validate, and archive a model of a protein complex structure.Protein Sci2021
33949948CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation.Elife2021
33166013Using Integrative Modeling Platform to compute, validate, and archive a model of a protein complex structure.Protein Sci2021
34833059A Framework for Stochastic Optimization of Parameters for Integrative Modeling of Macromolecular Assemblies.Life (Basel)2021
34833059A Framework for Stochastic Optimization of Parameters for Integrative Modeling of Macromolecular Assemblies.Life (Basel)2021
33949948CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation.Elife2021
30587581Optimizing model representation for integrative structure determination of macromolecular assemblies.Proc Natl Acad Sci U S A2019
30587581Optimizing model representation for integrative structure determination of macromolecular assemblies.Proc Natl Acad Sci U S A2019
31396911Modeling Biological Complexes Using Integrative Modeling Platform.Methods Mol Biol2019
31396911Modeling Biological Complexes Using Integrative Modeling Platform.Methods Mol Biol2019
28960548Integrative structure modeling with the Integrative Modeling Platform.Protein Sci2018
28960548Integrative structure modeling with the Integrative Modeling Platform.Protein Sci2018
28814505The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling.Mol Biol Cell2017
28814505The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling.Mol Biol Cell2017
29211988Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures.Biophys J2017
29211988Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures.Biophys J2017
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
26340423Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH.Mol Cell2015
26404856Extension of a protein docking algorithm to membranes and applications to amyloid precursor protein dimerization.Proteins2015
26340423Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH.Mol Cell2015
26404856Extension of a protein docking algorithm to membranes and applications to amyloid precursor protein dimerization.Proteins2015
24573483DOCK/PIERR: web server for structure prediction of protein-protein complexes.Methods Mol Biol2014
24573483DOCK/PIERR: web server for structure prediction of protein-protein complexes.Methods Mol Biol2014
23180599Improving ranking of models for protein complexes with side chain modeling and atomic potentials.Proteins2013
24206285Analyzing milestoning networks for molecular kinetics: definitions, algorithms, and examples.J Chem Phys2013
23180599Improving ranking of models for protein complexes with side chain modeling and atomic potentials.Proteins2013
24206285Analyzing milestoning networks for molecular kinetics: definitions, algorithms, and examples.J Chem Phys2013
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Collaborators

Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 9
Ron Elber
Institute for Computational Engineering and Science, University of Texas at Austin
Co-authored papers 5
Daniel J Saltzberg
University of California san francisco
Co-authored papers 3
Charles H Greenberg
University of California San Francisco
Co-authored papers 3
Ilan E Chemmama
University of California san francisco
Co-authored papers 3
Riccardo Pellarin
CNRS UMR 5086 and Universite Claude Bernard Lyon 1
Co-authored papers 3
Benjamin Webb
University of California san francisco
Co-authored papers 3
Ignacia Echeverria
University of California san francisco
Co-authored papers 2
Massimiliano Bonomi
Institut Pasteur, Universite Paris Cite, CNRS UMR 8
Co-authored papers 2
Peter Cimermancic
Verily Life Sciences LLC
Co-authored papers 2
Eric G D Muller
University of Washington
Co-authored papers 2
Trisha N Davis
University of Washington
Co-authored papers 2
Heather L Van Epps
University of Washington
Co-authored papers 1
Tyler Borrman
University of Massachusetts Medical School
Co-authored papers 1
Panagiotis L Kastritis
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 1
Jilong Li
Qiagen Inc.
Co-authored papers 1
Keehyoung Joo
Center for Advanced Computation, Korea Institute for Advanced Study
Co-authored papers 1
Ivan Anishchenko
University of Washington
Co-authored papers 1
Petras J Kundrotas
The University of Kansas
Co-authored papers 1
Eiichiro Ichiishi
International University of Health and Welfare (IUHV Hospital)
Co-authored papers 1
Anisah W Ghoorah
University of Mauritius
Co-authored papers 1
Neil J Bruce
Heidelberg Institute for Theoretical Studies (HITS)
Co-authored papers 1
Zhiwei Ma
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 1
Dmitri Beglov
Boston University
Co-authored papers 1
Ivan Rayment
College of Agricultural and Life Sciences, University of Wisconsin-Madison
Co-authored papers 1
Liming Qiu
Perelman School of Medicine, University of Pennsylvania
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Artem B Mamonov
MGH/Harvard Medical School
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Vishnu Raman
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Release 1.2