Author details

Full Name

Ben D MacArthur

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36630903	Stem cell biology needs a theory.		2023
37216034	Single-cell RNA-sequence analysis of human bone marrow reveals new targets for isolation of skeletal stem cells using spherical nucleic acids.	J Tissue Eng	2023
35051370	The geometry of cell fate.		2022
35941235	Resilient government requires data science reform.	Nature Human Behaviour	2022
36203560	Transcriptional programming of immunoregulatory responses in human Langerhans cells.	Frontiers in Immunology	2022
35135295	Fluctuations in T cell receptor and pMHC interactions regulate T cell activation.	Journal of the Royal Society Interface	2022
33045840	Micro RNA Targets in HIV Latency: Insights into Novel Layers of Latency Control.	AIDS Res Hum Retroviruses	2021
34240097	Dual dean entrainment with volume ratio modulation for efficient droplet co-encapsulation: extreme single-cell indexing.	Lab on a Chip	2021
33545078	Modeling Stem Cell Fates using Non-Markov Processes.		2021
34268705	Geometry and symmetry in biochemical reaction systems.	Theory in Biosciences	2021
34211464	An IRF1-IRF4 Toggle-Switch Controls Tolerogenic and Immunogenic Transcriptional Programming in Human Langerhans Cells.	Frontiers in Immunology	2021
34100065	Universal principles of lineage architecture and stem cell identity in renewing tissues.	Development (Cambridge)	2021
33816475	An Esrrb and Nanog Cell Fate Regulatory Module Controlled by Feed Forward Loop Interactions.	Front Cell Dev Biol	2021
32499608	Single platelet variability governs population sensitivity and initiates intrinsic heterotypic responses.	Communications Biology	2020
32195365	A systematic review of the applications of artificial intelligence and machine learning in autoimmune diseases.	npj Digital Medicine	2020
31949143	Genomic programming of IRF4-expressing human Langerhans cells.	Nat Commun	2020
31828979	Theory of cell fate.	Wiley Interdisciplinary Reviews: Systems Biology and Medicine	2020
33210617	Heterogeneity and 'memory' in stem cell populations.	Physical Biology	2020
33296684	Machine Learning of Hematopoietic Stem Cell Divisions from Paired Daughter Cell Expression Profiles Reveals Effects of Aging on Self-Renewal.		2020
33277618	Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing.	Communications Biology	2020
31199915	Beginning of a New Era: Mapping the Bone Marrow Niche.	Cell	2019
31903203	Stability and steady state of complex cooperative systems: a diakoptic approach.	Royal Society Open Science	2019
30723489	Machine Learning of Stem Cell Identities From Single-Cell Expression Data via Regulatory Network Archetypes.	Frontiers in Genetics	2019
30428347	Thrombopoietin Metabolically Primes Hematopoietic Stem Cells to Megakaryocyte-Lineage Differentiation.	Cell Reports	2018
28883279	Functional analysis of Protection of Telomeres 1a (Pot1a) in regulation of hematopoietic stem cell aging.	[Rinsho ketsueki] The Japanese journal of clinical hematology	2017
28957659	Stem Cell Differentiation as a Non-Markov Stochastic Process.	Cell Syst	2017
28986560	The telomere binding protein Pot1 maintains haematopoietic stem cell activity with age.	Nature Communications	2017
28636920	Nanog Fluctuations in Embryonic Stem Cells Highlight the Problem of Measurement in Cell Biology.	Biophysical Journal	2017
28546534	Classification of Paediatric Inflammatory Bowel Disease using Machine Learning.	Scientific Reports	2017
28373704	Noise-processing by signaling networks.	Scientific Reports	2017
27839867	Hematopoietic Stem Cells Count and Remember Self-Renewal Divisions.	Cell	2016
26889833	Extracellular Matrix Deposition in Engineered Micromass Cartilage Pellet Cultures: Measurements and Modelling.	PLoS ONE	2016
27357612	Single-cell pluripotency regulatory networks.	Proteomics	2016
27694914	Prediction of postoperative liver regeneration from clinical information using a data-led mathematical model.	Scientific Reports	2016
26029704	Quantifying the cumulative effect of low-penetrance genetic variants on breast cancer risk.	Molecular genetics & genomic medicine	2015
26613476	Entropy, Ergodicity, and Stem Cell Multipotency.	Physical Review Letters	2015
26267829	Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal.	Stem Cell Reports	2015
24743994	Visualization and clustering of high-dimensional transcriptome data using GATE.	Methods in Molecular Biology	2014
24591612	Collective dynamics of stem cell populations.	Proceedings of the National Academy of Sciences of the United States of America	2014
23300961	Power-laws and the use of pluripotent stem cell lines.	PLoS One	2013
23911316	Statistical mechanics of pluripotency.	Cell	2013
23103910	Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity.	Nat Cell Biol	2012
19892805	GATE: software for the analysis and visualization of high-dimensional time series expression data.	Bioinformatics	2010
20703299	Mesenchymal and haematopoietic stem cells form a unique bone marrow niche.	Nature	2010
20482087	Microdynamics and criticality of adaptive regulatory networks.	Phys Rev Lett	2010
19924215	Systems-level dynamic analyses of fate change in murine embryonic stem cells.	Nature	2009
19738627	Systems biology of stem cell fate and cellular reprogramming.	Nat Rev Mol Cell Biol	2009
19792210	Spectral characteristics of network redundancy.		2009
18769478	Stochasticity and the molecular mechanisms of induced pluripotency.	PLoS ONE	2008
19329576	Toward stem cell systems biology: from molecules to networks and landscapes.	Cold Spring Harb Symp Quant Biol	2008