Author details

Full Name

Jan Aerts

Affiliation

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37934634	Challenges and Opportunities in Data Visualization Education: A Call to Action.		2023
34512391	Towards Building a Quantitative Proteomics Toolbox in Precision Medicine: A Mini-Review.	Frontiers in Physiology	2021
36303773	Exploring the Microbiome Analysis and Visualization Landscape.		2021
33954230	A visual analytic approach for the identification of ICU patient subpopulations using ICD diagnostic codes.	PeerJ Computer Science	2021
32746253	Spanning Trees as Approximation of Data Structures.		2021
34582348	Remote Instruction for Data Visualization Design-A Report From the Trenches.	IEEE Computer Graphics and Applications	2021
31127050	Predicting disease-causing variant combinations.	Proc Natl Acad Sci U S A	2019
30445495	GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks.	Bioinformatics	2019
33816801	MCLEAN: Multilevel Clustering Exploration As Network.	PeerJ Computer Science	2018
28991892	SCENIC: single-cell regulatory network inference and clustering.	Nature Methods	2017
27131783	Candidate gene prioritization with Endeavour.	Nucleic Acids Res	2016
26330192	Highlights from the 5th Symposium on Biological Data Visualization: Part 1.	BMC Bioinformatics	2015
25716750	Corrigendum: Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network.	Nature Communications	2015
26977265	Art meets science: The Cosmopolitan Chicken Research Project.	Facts Views Vis Obgyn	2015
26361497	Highlights from the 5th Symposium on Biological Data Visualization: Part 2.	BMC Proceedings	2015
26355575	Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals.	AIDS	2015
25237396	Sequence Diversity Diagram for comparative analysis of multiple sequence alignments.	BMC Proceedings	2014
24495517	BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.	J Biomed Semantics	2014
24491297	In vitro screening of embryos by whole-genome sequencing: now, in the future or never?	Hum Reprod	2014
25232468	dendsort: modular leaf ordering methods for dendrogram representations in R.	F1000Research	2014
25204769	Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network.	Nature Communications	2014
23658417	TrioVis: a visualization approach for filtering genomic variants of parent-child trios.		2013
24076761	eXtasy: variant prioritization by genomic data fusion.	Nat Methods	2013
23803468	Pipit: visualizing functional impacts of structural variations.		2013
23885890	Unraveling genomic variation from next generation sequencing data.	BioData Min	2013
23605045	Meander: visually exploring the structural variome using space-filling curves.	Nucleic Acids Res	2013
23398680	The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.	J Biomed Semantics	2013
22607587	An eQTL biological data visualization challenge and approaches from the visualization community.	BMC Bioinformatics	2012
22439608	Arena3D: visualizing time-driven phenotypic differences in biological systems.	BMC Bioinformatics	2012
22332238	Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.	Bioinformatics	2012
23013645	Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease.	Genome Med	2012
22994508	The Ruby UCSC API: accessing the UCSC genome database using Ruby.	BMC Bioinformatics	2012
22662265	Exome sequencing and genetic testing for MODY.	PLoS One	2012
21978489	Medusa: A tool for exploring and clustering biological networks.	BMC Research Notes	2011
21527005	Using graph theory to analyze biological networks.	BioData Mining	2011
21278190	A Ruby API to query the Ensembl database for genomic features.	Bioinformatics	2011
21131973	CEP152 is a genome maintenance protein disrupted in Seckel syndrome.	Nat Genet	2011
21806842	The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.	J Biomed Semantics	2011
22185599	Which clustering algorithm is better for predicting protein complexes?	BMC Research Notes	2011
20360734	Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls.	Nature	2010
21304730	Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop.	Stand Genomic Sci	2010
20739307	BioRuby: bioinformatics software for the Ruby programming language.	Bioinformatics	2010
20727200	The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.	J Biomed Semantics	2010
19812545	Origins and functional impact of copy number variation in the human genome.	Nature	2010
19607723	An introduction to scripting in Ruby for biologists.	BMC Bioinformatics	2009
19393068	Genomic analysis reveals extensive gene duplication within the bovine TRB locus.	BMC Genomics	2009
19390049	The genome sequence of taurine cattle: a window to ruminant biology and evolution.	Science	2009
19390050	Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.	Science	2009
18492244	An assessment of population structure in eight breeds of cattle using a whole genome SNP panel.	BMC Genet	2008
18688244	Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.	Nat Biotechnol	2008