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Author Details

Raquel Dias
University of Florida
2008
25
14
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37515935Machine learning applications to improve flavor and nutritional content of horticultural crops through breeding and genetics.Curr Opin Biotechnol2023
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
32562451Remarkably Complex Microbial Community Composition in Bromeliad Tank Waters Revealed by eDNA Metabarcoding.J Eukaryot Microbiol2020
28595932Characterization of ciliate diversity in bromeliad tank waters from the Brazilian Atlantic Forest.Eur J Protistol2017
28361672Improving the accuracy of high-throughput protein-protein affinity prediction may require better training data.BMC Bioinformatics2017
28333205Convergence of Domain Architecture, Structure, and Ligand Affinity in Animal and Plant RNA-Binding Proteins.Mol Biol Evol2017
27379080Corrigendum: Integrating DNA Methylation and Gene Expression Data in the Development of the Soybean-Bradyrhizobium N2-Fixing Symbiosis.Front Microbiol2016
27148230Identification of the Genes Required for the Culture of Liberibacter crescens, the Closest Cultured Relative of the Liberibacter Plant Pathogens.Front Microbiol2016
27148207Integrating DNA Methylation and Gene Expression Data in the Development of the Soybean-Bradyrhizobium N2-Fixing Symbiosis.Front Microbiol2016
25395291Soil pH determines microbial diversity and composition in the park grass experiment.Microb Ecol2015
26673755Genomic Targets and Features of BarA-UvrY (-SirA) Signal Transduction Systems.PLoS One2015
26370248Different combinations of atomic interactions predict protein-small molecule and protein-DNA/RNA affinities with similar accuracy.Proteins2015
24969751MPI-blastn and NCBI-TaxCollector: improving metagenomic analysis with high performance classification and wide taxonomic attachment.J Bioinform Comput Biol2014
25540641Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes.Front Microbiol2014
24999826Genome sequence of Candidatus Nitrososphaera evergladensis from group I.1b enriched from Everglades soil reveals novel genomic features of the ammonia-oxidizing archaea.PLoS One2014
19275559Bioinformatics tools for screening of antiparasitic drugs.Curr Drug Targets2009
19282092Molecular modeling, dynamics and docking studies of purine nucleoside phosphorylase from Streptococcus pyogenes.Biophys Chem2009
18381241Molecular modeling and dynamics simulations of PNP from Streptococcus agalactiae.Bioorg Med Chem2008
18829335Evaluation of ligand-binding affinity using polynomial empirical scoring functions.Bioorg Med Chem2008
18790691Structural studies of human purine nucleoside phosphorylase: towards a new specific empirical scoring function.Arch Biochem Biophys2008
19128212Computational methods for calculation of ligand-binding affinity.Curr Drug Targets2008
19128213Molecular docking algorithms.Curr Drug Targets2008
19128216Evaluation of molecular docking using polynomial empirical scoring functions.Curr Drug Targets2008
19128217Experimental approaches to evaluate the thermodynamics of protein-drug interactions.Curr Drug Targets2008
19128219Molecular modeling as a tool for drug discovery.Curr Drug Targets2008
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Collaborators

Mark Gorelik
University of Florida
Co-authored papers 1
Geoffrey Hutinet
University of Florida
Co-authored papers 1
Stephen K Burley
The State University of New Jersey
Co-authored papers 1
Fran??oise Thibaud-Nissen
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 1
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European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Antoine Danchin
University of Hong Kong
Co-authored papers 1
Paul Monaghan
University of Florida
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Lucy J Colwell
Google Research
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Alan Bridge
carnegie mellon university
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Ana Conesa
Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
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Erica Watson Carter
University of Florida Citrus Research and Education Center
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David Vallenet
Institut Francois Jacob, CNRS, Universite d'Evry, Universite Paris-Saclay
Co-authored papers 1
Richard J Roberts
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Liudmyla Kondratova
Genetics Institute, University of Florida
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Cecilia N Arighi
University of Delaware
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Adam M Deutschbauer
Lawrence Berkeley National Laboratory
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Peter Uetz
Center for the Study of Biological Complexity, Virginia Commonwealth University
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Peter R Weigele
New England Biolabs Inc.
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Iddo Friedberg
Iowa State University
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Irina A Rodionova
University of California at San Diego
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Valerie Wood
University of Cambridge
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Peter D Karp
Pangea Systems Inc., USA and Marine Biological Laboratory
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Lana Saleh
The Pennsylvania State University, University Park
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Marshall Jaroch
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Dmitri Rodionov
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Release 1.2