Author details

Full Name

John A Bogovic

Affiliation

Howard Hughes Medical Institute

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36865282	OME-Zarr: a cloud-optimized bioimaging file format with international community support.	bioRxiv	2023
37613645	Towards Generalizable Organelle Segmentation in Volume Electron Microscopy.	Microsc Microanal	2023
37451774	Toward scalable reuse of vEM data: OME-Zarr to the rescue.	Methods Cell Biol	2023
36865282	OME-Zarr: a cloud-optimized bioimaging file format with international community support.	bioRxiv	2023
37098039	The big warp: Registration of disparate retinal imaging modalities and an example overlay of ultrawide-field photos and en-face OCTA images.	PLoS One	2023
37613645	Towards Generalizable Organelle Segmentation in Volume Electron Microscopy.	Microsc Microanal	2023
37451774	Toward scalable reuse of vEM data: OME-Zarr to the rescue.	Methods Cell Biol	2023
37098039	The big warp: Registration of disparate retinal imaging modalities and an example overlay of ultrawide-field photos and en-face OCTA images.	PLoS One	2023
36286237	Rapid reconstruction of neural circuits using tissue expansion and light sheet microscopy.	Elife	2022
36286237	Rapid reconstruction of neural circuits using tissue expansion and light sheet microscopy.	Elife	2022
33852913	ER-to-Golgi protein delivery through an interwoven, tubular network extending from ER.	Cell	2021
33852913	ER-to-Golgi protein delivery through an interwoven, tubular network extending from ER.	Cell	2021
33382698	An unbiased template of the Drosophila brain and ventral nerve cord.	PLoS One	2020
31949053	Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells.	Science	2020
33382698	An unbiased template of the Drosophila brain and ventral nerve cord.	PLoS One	2020
31949053	Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells.	Science	2020
30655415	Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.	Science	2019
30655415	Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.	Science	2019
30033368	A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster.	Cell	2018
30033368	A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster.	Cell	2018
28453669	Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy.	Bioinformatics	2017
28453669	Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy.	Bioinformatics	2017
26408861	Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease.	Neuroimage	2016
26408861	Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease.	Neuroimage	2016
22975160	Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters.	Neuroimage	2013
22975160	Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters.	Neuroimage	2013
22932976	System for integrated neuroimaging analysis and processing of structure.	Neuroinformatics	2013
24443683	SEGMENTATION OF THE COMPLETE SUPERIOR CEREBELLAR PEDUNCLES USING A MULTI-OBJECT GEOMETRIC DEFORMABLE MODEL.	Proc IEEE Int Symp Biomed Imaging	2013
24386546	Automatic Cell Segmentation in Fluorescence Images of Confluent Cell Monolayers Using Multi-object Geometric Deformable Model.	Proc SPIE Int Soc Opt Eng	2013
24382992	Parcellation of the Thalamus Using Diffusion Tensor Images and a Multi-object Geometric Deformable Model.	Proc SPIE Int Soc Opt Eng	2013
23316110	A Multiple Object Geometric Deformable Model for Image Segmentation.	Comput Vis Image Underst	2013
24683958	Automated segmentation of the cerebellar lobules using boundary specific classification and evolution.	Inf Process Med Imaging	2013
24683958	Automated segmentation of the cerebellar lobules using boundary specific classification and evolution.	Inf Process Med Imaging	2013
24382992	Parcellation of the Thalamus Using Diffusion Tensor Images and a Multi-object Geometric Deformable Model.	Proc SPIE Int Soc Opt Eng	2013
24386546	Automatic Cell Segmentation in Fluorescence Images of Confluent Cell Monolayers Using Multi-object Geometric Deformable Model.	Proc SPIE Int Soc Opt Eng	2013
24443683	SEGMENTATION OF THE COMPLETE SUPERIOR CEREBELLAR PEDUNCLES USING A MULTI-OBJECT GEOMETRIC DEFORMABLE MODEL.	Proc IEEE Int Symp Biomed Imaging	2013
23316110	A Multiple Object Geometric Deformable Model for Image Segmentation.	Comput Vis Image Underst	2013
22932976	System for integrated neuroimaging analysis and processing of structure.	Neuroinformatics	2013
21839181	Foibles, follies, and fusion: web-based collaboration for medical image labeling.	Neuroimage	2012
22481745	Magnetic resonance connectome automated pipeline: an overview.	IEEE Pulse	2012
22010145	Robust statistical fusion of image labels.	IEEE Trans Med Imaging	2012
21839181	Foibles, follies, and fusion: web-based collaboration for medical image labeling.	Neuroimage	2012
22019877	Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI.	Neuroimage	2012
22481745	Magnetic resonance connectome automated pipeline: an overview.	IEEE Pulse	2012
22019877	Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI.	Neuroimage	2012
22010145	Robust statistical fusion of image labels.	IEEE Trans Med Imaging	2012
21094686	Multi-parametric neuroimaging reproducibility: a 3-T resource study.	Neuroimage	2011
23503332	Distance Transforms in Multi Channel MR Image Registration.	Proc SPIE Int Soc Opt Eng	2011
21094686	Multi-parametric neuroimaging reproducibility: a 3-T resource study.	Neuroimage	2011
21718790	Direct segmentation of the major white matter tracts in diffusion tensor images.	Neuroimage	2011

1 - 50 of 70

Andrew J Plassard

Vanderbilt University

Career Start Year 2012

Number of shared co-authors 1

Ben Glocker

Imperial College London

Career Start Year 2007

Number of shared co-authors 1

Daniel J Tward

University of California at Los Angeles

Career Start Year 2007

Number of shared co-authors 2

Juan Eugenio Iglesias

Massachusetts Institute of Technology

Career Start Year 2007

Number of shared co-authors 0

Bjoern H Menze

Technische Universitat Munchen, University of Zurich

Career Start Year 2006

Number of shared co-authors 1

Fan Zhang

Affiliated Brain Hospital of Guangzhou Medical University

Career Start Year 2006

Number of shared co-authors 0

Ali R Khan

Western University

Career Start Year 2005

Number of shared co-authors 2

Mert R Sabuncu

Cornell University and Cornell Tech

Career Start Year 2004

Number of shared co-authors 1

Anand A Joshi

University of Southern California

Career Start Year 2004

Number of shared co-authors 0

Brian B Avants

University of Virginia

Career Start Year 2003

Number of shared co-authors 1

Dinggang Shen

ShanghaiTech University.

Career Start Year 2001

Number of shared co-authors 1

David W Shattuck

David Geffen School of Medicine at university of california los angeles

Career Start Year 2001

Number of shared co-authors 0

Torsten Rohlfing

Center for Health Sciences

Career Start Year 2000

Number of shared co-authors 2

Nicholas J Tustison

University of Virginia

Career Start Year 2000

Number of shared co-authors 1

Boudewijn P F Lelieveldt

Leiden University Medical Center

Career Start Year 1999

Number of shared co-authors 5

Koen Van Leemput

Technical University of Denmark

Career Start Year 1999

Number of shared co-authors 0

Polina Golland

Massachusetts Institute of Technology

Career Start Year 1998

Number of shared co-authors 1

Simon K Warfield

Boston Children's Hospital

Career Start Year 1995

Number of shared co-authors 0

William M Wells

Brigham and Women's Hospital

Career Start Year 1994

Number of shared co-authors 0

James C Gee

University of Pennsylvania

Career Start Year 1993

Number of shared co-authors 4

Christos Davatzikos

University of Pennsylvania

Career Start Year 1992

Number of shared co-authors 3

Andrew F Laine

Columbia University

Career Start Year 1992

Number of shared co-authors 1

Bruce Fischl

Massachusetts Institute of Technology

Career Start Year 1991

Number of shared co-authors 2

Georg Langs

Medical University of Vienna

Career Start Year 1991

Number of shared co-authors 2

Guido Gerig

New York University

Career Start Year 1991

Number of shared co-authors 0

Ron Kikinis

Brigham and Women's Hospital, Harvard Medical School

Career Start Year 1987

Number of shared co-authors 0

Mirza Faisal Beg

Simon Fraser University

Career Start Year 1987

Number of shared co-authors 0

Arthur W Toga

Keio University School of Medicine

Career Start Year 1979

Number of shared co-authors 5

Mark Jenkinson

University of Oxford

Career Start Year 1970

Number of shared co-authors 2

Guillermo Sapiro

Duke University

Career Start Year 1969

Number of shared co-authors 1

row(s) 1 - 30 of 30

Bennett A Landman

Vanderbilt University

Co-authored papers 12

Stephan Saalfeld

Howard Hughes Medical Institute

Co-authored papers 7

Min Chen

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 3

Edward S Boyden

McGovern Institute for Brain Research

Co-authored papers 2

Norman Rzepka

Co-authored papers 2

Giovanni Palla

Institute of Computational Biology

Co-authored papers 1

Tong Li

Wellcome Sanger Institute

Co-authored papers 1

Prisca Liberali

Friedrich Miescher Institute for Biomedical Imaging

Co-authored papers 1

William Moore

University of Dundee

Co-authored papers 1

Peter C Searson

Institute for NanoBioTechnology, Johns Hopkins University

Co-authored papers 1

Mark Kittisopikul

Howard Hughes Medical Institute

Co-authored papers 1

Bugra ??zdemir

Signaling Research Centers CIBSS and BIOSS, University of Freiburg

Co-authored papers 1

Petr Walczysko

University of Dundee

Co-authored papers 1

Melissa Linkert

Glencoe Software Inc.

Co-authored papers 1

Khaled Mohamed

University of Dundee

Co-authored papers 1

Merlin Lange

Co-authored papers 1

Lucas Pelkmans

University of Zurich

Co-authored papers 1

Oliver Stegle

Wellcome Sanger Institute

Co-authored papers 1

S??bastien Besson

University of Dundee

Co-authored papers 1

Ilan Gold

Harvard Medical School

Co-authored papers 1

Mark S Keller

Harvard Medical School

Co-authored papers 1

Ayb??ke K??pc?? Yolda??

European Bioinformatics Institute

Co-authored papers 1

Daniel Toloudis

Allen Institute for Cell Science

Co-authored papers 1

Brett D Mensh

Howard Hughes Medical Institute

Co-authored papers 1

Jeremy Maitin-Shepard

Google Research

Co-authored papers 1

Luca Marconato

Co-authored papers 1

Erin Weisbart

Broad Institute of MIT and Harvard

Co-authored papers 1

Jason R Swedlow

University of Dundee

Co-authored papers 1

Dave Horsfall

Biosciences Institute, Newcastle University

Co-authored papers 1

Christian Tischer

Center for Bioimage Analysis

Co-authored papers 1

1 - 30

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