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Author Details

Gail Ackermann
University of California San Diego
2013
51
28
PMIDPaper TitleJournal TitlePublished Year
36862087Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol.Environ Sci Technol2023
37853256Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2023
36722970The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin.mSystems2023
36691982Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome.Mov Disord2023
36649143Stability of the Fecal and Oral Microbiome over 2 Years at -80°C for Multiple Collection Methods.Cancer Epidemiol Biomarkers Prev2023
35798960Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2022
35378331The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients.Cell Mol Gastroenterol Hepatol2022
33026068Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity.Inflamm Bowel Dis2021
33853672Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection.Microbiome2021
33906915Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition.mSystems2021
33512248A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.Biotechniques2021
34589776Individuals with substance use disorders have a distinct oral microbiome pattern.Brain Behav Immun Health2021
34103074SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment.Microbiome2021
32697939The Urinary Tract Microbiome in Older Women Exhibits Host Genetic and Environmental Influences.Cell Host Microbe2020
32047925The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months.Am J Clin Nutr2020
33200135A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.bioRxiv2020
33244003Vitamin D metabolites and the gut microbiome in older men.Nat Commun2020
33236030Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment.medRxiv2020
32576651High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy.mSystems2020
30760325Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome.Microbiome2019
31239397redbiom: a Rapid Sample Discovery and Feature Characterization System.mSystems2019
31551401Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis.mSystems2019
31189482The impact of skin care products on skin chemistry and microbiome dynamics.BMC Biol2019
30714619Suppression of the gut microbiome ameliorates age-related arterial dysfunction and oxidative stress in mice.J Physiol2019
31058230Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems.mSystems2019
29795809American Gut: an Open Platform for Citizen Science Microbiome Research.mSystems2018
29896566Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome.mSystems2018
30521034Erratum to: The sponge microbiome project.Gigascience2018
30263961Niche partitioning of a pathogenic microbiome driven by chemical gradients.Sci Adv2018
30275573Qiita: rapid, web-enabled microbiome meta-analysis.Nat Methods2018
29700420Exposure to toxic metals triggers unique responses from the rat gut microbiota.Sci Rep2018
28900257Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems.Sci Rep2017
28492366Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae.Elife2017
29056429Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.Cell Host Microbe2017
29020741The sponge microbiome project.Gigascience2017
29042495Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome.mBio2017
29088705A communal catalogue reveals Earth's multiscale microbial diversity.Nature2017
27545648Prevalence and genetic diversity of Blastocystis in family units living in the United States.Infect Genet Evol2016
26657285Microbial community assembly and metabolic function during mammalian corpse decomposition.Science2016
27822543The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat.mSystems2016
27602409Extreme Dysbiosis of the Microbiome in Critical Illness.mSphere2016
27306690Diversity, structure and convergent evolution of the global sponge microbiome.Nat Commun2016
27296526Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets.Gigascience2016
25974302Microbiota and Host Nutrition across Plant and Animal Kingdoms.Cell Host Microbe2015
27822518Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys.mSystems2015
25825778Molecular cartography of the human skin surface in 3D.Proc Natl Acad Sci U S A2015
24907317Vertebrate decomposition is accelerated by soil microbes.Appl Environ Microbiol2014
25140823HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats.PLoS One2014
23861384Meta-analyses of studies of the human microbiota.Genome Res2013
24137541A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system.Elife2013
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Collaborators

Rob Knight
University of California
Co-authored papers 45
Gregory Humphrey
University of California
Co-authored papers 28
Pieter C Dorrestein
Co-authored papers 19
Antonio Gonzalez
University of California San Diego School of Medicine
Co-authored papers 16
Daniel McDonald
University of California San Diego
Co-authored papers 13
Yoshiki V??zquez-Baeza
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 12
Clarisse Marotz
University of California San Diego
Co-authored papers 9
Austin D Swafford
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 9
Jack A Gilbert
Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 7
Cameron Martino
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 7
Mingxun Wang
Co-authored papers 7
Pedro Belda-Ferre
University of California San Diego
Co-authored papers 7
Justin P Shaffer
University of California San Diego
Co-authored papers 6
Stefan Janssen
Co-authored papers 6
Christian L Lauber
The Ohio State University College of Medicine.
Co-authored papers 5
Qiyun Zhu
Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University
Co-authored papers 5
Nuno Bandeira
University of California
Co-authored papers 5
Alan K Jarmusch
Co-authored papers 4
Theodore Alexandrov
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California
Co-authored papers 4
Parambir S Dulai
Feinberg School of Medicine Northwestern University
Co-authored papers 4
Robert W Thacker
Stony Brook University
Co-authored papers 3
Mehrbod Estaki
Cumming School of Medicine, University of Calgary
Co-authored papers 3
Stephen Wandro
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 3
Brigid S Boland
University of California
Co-authored papers 3
Neha Garg
Co-authored papers 3
Luke R Thompson
Northern Gulf Institute, Mississippi State University
Co-authored papers 3
Joshua Ladau
Lawrence Berkeley National Laboratory
Co-authored papers 2
Gabriel G Haddad
university of california san diego
Co-authored papers 2
Tatyana I Kalashnikova
The Scripps Research Institute
Co-authored papers 2
John T Chang
University of California San Diego
Co-authored papers 2
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