Author details

Full Name

Michael C Thompson

Affiliation

University of California

ORCID

Career Start Year

2011

Papers

H Index

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37398339	Structural characterization of ligand binding and pH-specific enzymatic activity of mouse Acidic Mammalian Chitinase.	bioRxiv	2024
37723259	Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.	Nat Chem	2023
37748829	Combining temperature perturbations with X-ray crystallography to study dynamic macromolecules: A thorough discussion of experimental methods.	Methods Enzymol	2023
37645800	Changes in an Enzyme Ensemble During Catalysis Observed by High Resolution XFEL Crystallography.	bioRxiv	2023
35169801	The mechanisms of catalysis and ligand binding for the SARS-CoV-2 NSP3 macrodomain from neutron and X-ray diffraction at room temperature.	bioRxiv	2022
35622909	The mechanisms of catalysis and ligand binding for the SARS-CoV-2 NSP3 macrodomain from neutron and x-ray diffraction at room temperature.	Sci Adv	2022
35254891	Accurate positioning of functional residues with robotics-inspired computational protein design.	Proc Natl Acad Sci U S A	2022
33853786	Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.	Sci Adv	2021
32148858	Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals.	IUCrJ	2020
33154106	An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.	Science	2020
32968058	Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico.	Nat Commun	2020
32855341	Expanding the space of protein geometries by computational design of de novo fold families.	Science	2020
32676184	Advances in methods for atomic resolution macromolecular structure determination.	F1000Res	2020
32504875	BATMAN: Fast and Accurate Integration of Single-Cell RNA-Seq Datasets via Minimum-Weight Matching.	iScience	2020
31527847	Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme.	Nat Chem	2019
31754004	Computational design of a modular protein sense-response system.	Science	2019
31801874	Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis.	Proc Natl Acad Sci U S A	2019
29717712	Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism.	Acta Crystallogr D Struct Biol	2018
28573574	Identifying and Overcoming Crystal Pathologies: Disorder and Twinning.	Methods Mol Biol	2017
28416112	Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin.	Structure	2017
28759216	Allosteric Inhibitors, Crystallography, and Comparative Analysis Reveal Network of Coordinated Movement across Human Herpesvirus Proteases.	J Am Chem Soc	2017
26988700	Structure of a novel 13 nm dodecahedral nanocage assembled from a redesigned bacterial microcompartment shell protein.	Chem Commun (Camb)	2016
25752492	An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.	Protein Sci	2015
26422513	Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.	Elife	2015
24419393	A challenging interpretation of a hexagonally layered protein structure.	Acta Crystallogr D Biol Crystallogr	2014
25484204	Structure of a bacterial microcompartment shell protein bound to a cobalamin cofactor.	Acta Crystallogr F Struct Biol Commun	2014
25102080	Identification of a unique Fe-S cluster binding site in a glycyl-radical type microcompartment shell protein.	J Mol Biol	2014
21315581	The protein shells of bacterial microcompartment organelles.	Curr Opin Struct Biol	2011

1 - 28 of 28

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Career Start Year 2007

Number of shared co-authors 1

Frank DiMaio

University of Washington

Career Start Year 2006

Number of shared co-authors 5

Seung Joong Kim

Korea Advanced Institute of Science and Technology (KAIST)

Career Start Year 2006

Number of shared co-authors 1

Andrew E Whitten

Institute for Molecular Bioscience, University of Queensland

Career Start Year 2004

Number of shared co-authors 0

Gunnar F Schr??der

Institute of Biological Information Processing (Structural Biochemistry)

Career Start Year 2003

Number of shared co-authors 1

Tsutomu Matsui

Stanford University

Career Start Year 2003

Number of shared co-authors 1

Gabriel C Lander

The Scripps Research Institute

Career Start Year 2003

Number of shared co-authors 3

Greg L Hura

Lawrence Berkeley National Laboratory, University of California Santa Cruz

Career Start Year 2002

Number of shared co-authors 1

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 0

Maya Topf

Leibniz-Institut fur Virologie (LIV)

Career Start Year 2001

Number of shared co-authors 0

Anthony P Duff

Bragg Institute

Career Start Year 2000

Number of shared co-authors 0

Jeffrey B Bonanno

Albert Einstein College of Medicine

Career Start Year 1999

Number of shared co-authors 0

David R Hall

Diamond Light Source Ltd, Harwell Science & Innovation Campus

Career Start Year 1998

Number of shared co-authors 1

Li-Wei Hung

Los Alamos National Laboratory

Career Start Year 1997

Number of shared co-authors 2

Ashley M Deacon

Accelero Biostructures Inc., USA XPose Therapeutics Inc.

Career Start Year 1996

Number of shared co-authors 1

Clemens Vonrhein

Global Phasing Ltd

Career Start Year 1995

Number of shared co-authors 0

Orly Dym

Weizmann Institute of Science

Career Start Year 1995

Number of shared co-authors 0

Paul D Adams

Lawrence Berkeley National Laboratory

Career Start Year 1994

Number of shared co-authors 5

Youngchang Kim

Argonne National Laboratory

Career Start Year 1993

Number of shared co-authors 0

Wladek Minor

University of Virginia

Career Start Year 1989

Number of shared co-authors 2

David Baker

University of Washington

Career Start Year 1988

Number of shared co-authors 8

John F Hunt

Columbia University

Career Start Year 1986

Number of shared co-authors 0

Catherine L Lawson

Institute for Quantitative Biomedicine, State University of New Jersey

Career Start Year 1985

Number of shared co-authors 1

Michal Hammel

Lawrence Berkeley National Laboratory

Career Start Year 1981

Number of shared co-authors 1

Dmitri I Svergun

King's College London BHF Centre for Research Excellence

Career Start Year 1980

Number of shared co-authors 0

Andrzej Joachimiak

Center for Structural Biology of Infectious Diseases, University of Chicago

Career Start Year 1979

Number of shared co-authors 2

David A Agard

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Career Start Year 1977

Number of shared co-authors 49

Tom Alber

University of California berkeley

Career Start Year 1976

Number of shared co-authors 9

George N Phillips

Rice University

Career Start Year 1974

Number of shared co-authors 1

Wayne A Hendrickson

Columbia University

Career Start Year 1968

Number of shared co-authors 0

row(s) 1 - 30 of 30

James S Fraser

University of California san francisco

Co-authored papers 15

Iris D Young

University of California san francisco

Co-authored papers 5

James M Holton

Lawrence Berkeley National Laboratory

Co-authored papers 5

Galen J Correy

University of California san francisco

Co-authored papers 4

Henry van den Bedem

University of California San Francisco

Co-authored papers 3

Tanja Kortemme

University of California san francisco

Co-authored papers 3

Justin T Biel

University of California san francisco

Co-authored papers 3

Mark J S Kelly

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 2

Frank R Moss

University of California San Francisco

Co-authored papers 2

Duilio Cascio

Co-authored papers 2

Michael E Wall

Co-authored papers 2

Alan Ashworth

UCSF Helen Diller Family Comprehensive Cancer Center

Co-authored papers 2

Huong T Kratochvil

Department of Pharmaceutical Chemistry, University of California-San Francisco

Co-authored papers 2

Ishan Deshpande

Department of Pharmaceutical Chemistry, University of California san francisco

Co-authored papers 2

Gregory E Merz

University of California san francisco

Co-authored papers 2

Jacob E Corn

Co-authored papers 1

Noah Ollikainen

California Institute of Technology

Co-authored papers 1

Sasha Dickinson

Co-authored papers 1

Tristan W Owens

University of California san francisco

Co-authored papers 1

Sayan Gupta

Lawrence Berkeley National Laboratory

Co-authored papers 1

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 1

Nadia Herrera

University of California san francisco

Co-authored papers 1

Ming Sun

Columbia University

Co-authored papers 1

Julian P Whitelegge

Co-authored papers 1

Fei Li

Co-authored papers 1

Michael Schoof

Howard Hughes Medical Institute, University of California at San Francisco

Co-authored papers 1

Priyadarshini Jaishankar

Department of Pharmaceutical Chemistry, University of California san francisco

Co-authored papers 1

Caleigh M Azumaya

Fred Hutchinson Cancer Center

Co-authored papers 1

Yuwei Liu

Howard Hughes Medical Institute, University of California at San Francisco

Co-authored papers 1

Marco Vignuzzi

Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)

Co-authored papers 1

1 - 30

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