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Author Details

Anne-Katrin Emde
Variant Bio Inc.
2006
28
19
PMIDPaper TitleJournal TitlePublished Year
35484108Somatic whole genome dynamics of precancer in Barrett's esophagus reveals features associated with disease progression.Nat Commun2022
35484108Somatic whole genome dynamics of precancer in Barrett's esophagus reveals features associated with disease progression.Nat Commun2022
34719381Mid-pass whole genome sequencing enables biomedical genetic studies of diverse populations.BMC Genomics2021
34719381Mid-pass whole genome sequencing enables biomedical genetic studies of diverse populations.BMC Genomics2021
32918070Author Correction: PGBD5 promotes site-specific oncogenic mutations in human tumors.Nat Genet2020
32918070Author Correction: PGBD5 promotes site-specific oncogenic mutations in human tumors.Nat Genet2020
33007263Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs.Cell2020
33007263Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs.Cell2020
30563911Human papillomavirus and the landscape of secondary genetic alterations in oral cancers.Genome Res2019
30563911Human papillomavirus and the landscape of secondary genetic alterations in oral cancers.Genome Res2019
31023376Sequencing and curation strategies for identifying candidate glioblastoma treatments.BMC Med Genomics2019
31375115Correction to: Sequencing and curation strategies for identifying candidate glioblastoma treatments.BMC Med Genomics2019
31375115Correction to: Sequencing and curation strategies for identifying candidate glioblastoma treatments.BMC Med Genomics2019
31023376Sequencing and curation strategies for identifying candidate glioblastoma treatments.BMC Med Genomics2019
29392687Whole Genome Sequencing-Based Discovery of Structural Variants in Glioblastoma.Methods Mol Biol2018
30138725Analytical Validation of Clinical Whole-Genome and Transcriptome Sequencing of Patient-Derived Tumors for Reporting Targetable Variants in Cancer.J Mol Diagn2018
30271907Genome-wide somatic variant calling using localized colored de Bruijn graphs.Commun Biol2018
29392687Whole Genome Sequencing-Based Discovery of Structural Variants in Glioblastoma.Methods Mol Biol2018
30138725Analytical Validation of Clinical Whole-Genome and Transcriptome Sequencing of Patient-Derived Tumors for Reporting Targetable Variants in Cancer.J Mol Diagn2018
30271907Genome-wide somatic variant calling using localized colored de Bruijn graphs.Commun Biol2018
28740869Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma.Neurol Genet2017
28504702PGBD5 promotes site-specific oncogenic mutations in human tumors.Nat Genet2017
28951624Erratum: PGBD5 promotes site-specific oncogenic mutations in human tumors.Nat Genet2017
28740869Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma.Neurol Genet2017
29333526Next-Generation Rapid Autopsies Enable Tumor Evolution Tracking and Generation of Preclinical Models.JCO Precis Oncol2017
29333526Next-Generation Rapid Autopsies Enable Tumor Evolution Tracking and Generation of Preclinical Models.JCO Precis Oncol2017
28951624Erratum: PGBD5 promotes site-specific oncogenic mutations in human tumors.Nat Genet2017
28504702PGBD5 promotes site-specific oncogenic mutations in human tumors.Nat Genet2017
25644381X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes.Mol Psychiatry2016
25644381X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes.Mol Psychiatry2016
26181256Whole-Exome Sequencing of Metastatic Cancer and Biomarkers of Treatment Response.JAMA Oncol2015
26181256Whole-Exome Sequencing of Metastatic Cancer and Biomarkers of Treatment Response.JAMA Oncol2015
24578576Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma.Science2014
25333069Disease variants in genomes of 44 centenarians.Mol Genet Genomic Med2014
25028727Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone.Bioinformatics2014
24578576Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma.Science2014
25164765Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions.Genome Biol2014
25333069Disease variants in genomes of 44 centenarians.Mol Genet Genomic Med2014
25028727Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone.Bioinformatics2014
25164765Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions.Genome Biol2014
22238266Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.Bioinformatics2012
22302574Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.Bioinformatics2012
22238266Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.Bioinformatics2012
22302574Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.Bioinformatics2012
21615913A novel and well-defined benchmarking method for second generation read mapping.BMC Bioinformatics2011
21615913A novel and well-defined benchmarking method for second generation read mapping.BMC Bioinformatics2011
19880369MicroRazerS: rapid alignment of small RNA reads.Bioinformatics2010
19880369MicroRazerS: rapid alignment of small RNA reads.Bioinformatics2010
19269990A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads.Bioinformatics2009
19592482RazerS--fast read mapping with sensitivity control.Genome Res2009
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Collaborators

Minita Shah
Co-authored papers 11
Nicolas Robine
Sloan-Kettering Institute
Co-authored papers 10
Kanika Arora
Co-authored papers 9
Knut Reinert
Institut fur Informatik, Freie Universitat Berlin
Co-authored papers 8
Vladimir Vacic
Stanley Institute for Cognitive Genomics
Co-authored papers 8
Robert B Darnell
Co-authored papers 6
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Broad Institute of Harvard and MIT
Co-authored papers 5
Catherine Reeves
Co-authored papers 5
Alex Kentsis
Memorial Sloan-Kettering Cancer Center
Co-authored papers 4
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 3
Kahn Rhrissorrakrai
T.J. Watson Research Center
Co-authored papers 3
Ian C MacArthur
Co-authored papers 3
Elizabeth J Perlman
Ann & Robert H. Lurie Children's Hospital of Chicago
Co-authored papers 3
Eric Still
Co-authored papers 3
Nicholas D Socci
Co-authored papers 3
Elisa de Stanchina
Co-authored papers 3
Elias Rodriguez-Fos
Co-authored papers 3
Jiali Zhuang
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Santiago González-Moreno
Co-authored papers 3
Richard Koche
Memorial Sloan Kettering Cancer Center
Co-authored papers 3
Olivier Elemento
Meyer Cancer Center
Co-authored papers 3
Tobias Rausch
University of Heidelberg
Co-authored papers 3
Dayna M Oschwald
Washington University School of Medicine
Co-authored papers 3
Amy Eisenberg
Co-authored papers 3
Anton G Henssen
Co-authored papers 3
Kenneth Eng
Caryl and Israel Englander Institute for Precision Medicine
Co-authored papers 3
Hanno Steen
Boston Children's Hospital, USA Harvard Medical School, Harvard Medical School
Co-authored papers 3
Cristina R Antonescu
Memorial Sloan Kettering Cancer Center
Co-authored papers 3
Montserrat Puiggròs
Co-authored papers 3
Stephen P Jackson
Mission Therapeutics Ltd. Glenn Berge Building
Co-authored papers 3
Release 1.2