Author details

Full Name

Ross C Hardison

Affiliation

ORCID

Career Start Year

1975

Papers

246

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37066352	Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.	bioRxiv	2024
36868189	Gene silencing dynamics are modulated by transiently active regulatory elements.		2023
38014261	Genome folding principles revealed in condensin-depleted mitotic chromosomes.		2023
36893455	Molecular basis of polycomb group protein-mediated fetal hemoglobin repression.		2023
37333291	RETROFIT: Reference-free deconvolution of cell-type mixtures in spatial transcriptomics.		2023
36941541	Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation.		2023
35015834	Genomic landscape of TCRÎ±Î² and TCRÎ³Î´ T-large granular lymphocyte leukemia.	Blood	2022
36371401	CLIMB: High-dimensional association detection in large scale genomic data.	Nature Communications	2022
36369346	CTCF blocks antisense transcription initiation at divergent promoters.	Nature Structural and Molecular Biology	2022
35389439	Promoter competition in globin gene control.	Blood	2022
35650318	Publisher Correction: Dual function NFI factors control fetal hemoglobin silencing in adult erythroid cells.	Nature Genetics	2022
36289338	Subtype-specific 3D genome alteration in acute myeloid leukaemia.	Nature	2022
35941187	HIC2 controls developmental hemoglobin switching by repressing BCL11A transcription.	Nature Genetics	2022
35618846	Dual function NFI factors control fetal hemoglobin silencing in adult erythroid cells.	Nature Genetics	2022
35474001	Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2022
35042722	Domain-adaptive neural networks improve cross-species prediction of transcription factor binding.	Genome Res	2022
34490838	Strategies to improve pharmacogenomic-guided treatment options for patients with Î²-hemoglobinopathies.	Expert Review of Hematology	2021
33958780	Single-nucleotide-level mapping of DNA regulatory elements that control fetal hemoglobin expression.	Nature Genetics	2021
33681991	S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types.		2021
33626344	Distinct properties and functions of CTCF revealed by a rapidly inducible degron system.	Cell Rep	2021
33786584	Frequent somatic TET2 mutations in chronic NK-LGL leukemia with distinct patterns of cytopenias.	Blood	2021
33512425	Dynamic CTCF binding directly mediates interactions among cis-regulatory elements essential for hematopoiesis.	Blood	2021
33301730	ZNF410Â Uniquely Activates the NuRD Component CHD4 to Silence Fetal Hemoglobin Expression.	Molecular Cell	2021
33125055	Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations.	Nucleic Acids Research	2021
34453048	CTCF and transcription influence chromatin structure re-configuration after mitosis.	Nature Communications	2021
34450641	HDAC1 is required for GATA-1 transcription activity, global chromatin occupancy and hematopoiesis.	Nucleic Acids Research	2021
32728245	The changing mouse embryo transcriptome at whole tissue and single-cell resolution.	Nature	2020
32268371	Understanding heterogeneity of fetal hemoglobin induction through comparative analysis of F and A erythroblasts.	Blood	2020
32299090	The HRI-regulated transcription factor ATF4 activates BCL11A transcription to silence fetal hemoglobin expression.	Blood	2020
31769130	Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells.	IUBMB Life	2020
32086521	S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data.	Nucleic Acids Research	2020
32868908	Alteration of genome folding via contact domain boundary insertion.	Nature Genetics	2020
33239788	A map of cis-regulatory elements and 3D genome structures in zebrafish.	Nature	2020
32956454	HRI depletion cooperates with pharmacologic inducers to elevate fetal hemoglobin and reduce sickle cell formation.	Blood advances	2020
32673391	A Cambrian origin for globin gene regulation.	Blood	2020
32728249	Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2020
31126914	The E3 ligase adaptor molecule SPOP regulates fetal hemoglobin levels in adult erythroid cells.	Blood Adv	2019
31847870	OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries.		2019
31776509	Chromatin structure dynamics during the mitosis-to-G1 phase transition.	Nature	2019
30554946	Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.	Molecular Cell	2019
30970245	Interrogating Histone Acetylation and BRD4 as Mitotic Bookmarks of Transcription.	Cell Rep	2019
29807547	Establishment of regulatory elements during erythro-megakaryopoiesis identifies hematopoietic lineage-commitment points.	Epigenetics and Chromatin	2018
28811072	Evolution of hemoglobin loci and their regulatory elements.	Blood Cells, Molecules, and Diseases	2018
30026227	Domain-focused CRISPR screen identifies HRI as a fetal hemoglobin regulator in human erythroid cells.	Science	2018
30202056	Integrative detection and analysis of structural variation in cancer genomes.	Nat Genet	2018
30286773	The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions.	Genome Biol	2018
29615406	Selenoproteins regulate stress erythroid progenitors and spleen microenvironment during stress erythropoiesis.	Blood	2018
29472540	Exploiting genetic variation to uncover rules of transcription factor binding and chromatin accessibility.	Nat Commun	2018
28973456	Accurate and reproducible functional maps in 127 human cell types via 2D genome segmentation.	Nucleic Acids Research	2017
28916711	Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element.	Genes Dev	2017