Skip to Main Content

Author Details

Shigeyuki Yokoyama
Shinshu University School of Medicine
1979
985
99
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35994323Crystal structure analysis and molecular dynamics simulations of arginase from <i>Thermus thermophilus</i>.J Biomol Struct Dyn2023
37906694Site-specific photo-crosslinking/cleavage for protein-protein interface identification reveals oligomeric assembly of lysosomal-associated membrane protein type 2A in mammalian cells.Protein Sci2023
37418020Contributions of the N-terminal flanking residues of an antigenic peptide from the Japanese cedar pollen allergen Cry j 1 to the T-cell activation by HLA-DP5.Int Immunol2023
37047230Crystal Structure of Pyrrolysyl-tRNA Synthetase from a Methanogenic Archaeon ISO4-G1 and Its Structure-Based Engineering for Highly-Productive Cell-Free Genetic Code Expansion with Non-Canonical Amino Acids.Int J Mol Sci2023
36848820Structural basis for the dual GTPase specificity of the DOCK10 guanine nucleotide exchange factor.Biochem Biophys Res Commun2023
36563626Crystal structure analysis of pyrrolidone carboxyl peptidase from Thermus thermophilus.Biophys Chem2023
34783967<sup>1</sup>H, <sup>13</sup>C and <sup>15</sup>N resonance assignments and solution structures of the two RRM domains of Matrin-3.Biomol NMR Assign2022
35666428<sup>1</sup>H, <sup>13</sup>C, and <sup>15</sup>N resonance assignments and solution structures of the KH domain of human ribosome binding factor A, mtRbfA, involved in mitochondrial ribosome biogenesis.Biomol NMR Assign2022
35393565Rapid cloning of antigen-specific T-cell receptors by leveraging the cis activation of T cells.Nat Biomed Eng2022
34942188The two-domain architecture of LAMP2A regulates its interaction with Hsc70.Exp Cell Res2022
32930954<sup>1</sup>H, <sup>13</sup>C and <sup>15</sup>N resonance assignment of the YTH domain of YTHDC2.Biomol NMR Assign2021
33743393Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora, a structural insight into biosynthesis of a blue anthocyanin.Phytochemistry2021
33574036A conserved PI(4,5)P2-binding domain is critical for immune regulatory function of DOCK8.Life Sci Alliance2021
33849387Direct homophilic interaction of LAMP2A with the two-domain architecture revealed by site-directed photo-crosslinks and steric hindrances in mammalian cells.Autophagy2021
33561746An expanded genetic code facilitates antibody chemical conjugation involving the lambda light chain.Biochem Biophys Res Commun2021
33610046Structural and functional characterization of a putative carbonic anhydrase from Geobacillus kaustophilus reveals its cambialistic function.Biochem Biophys Res Commun2021
34103026Serum anti-DIDO1, anti-CPSF2, and anti-FOXJ2 antibodies as predictive risk markers for acute ischemic stroke.BMC Med2021
33420419AdipoR agonist increases insulin sensitivity and exercise endurance in AdipoR-humanized mice.Commun Biol2021
32166890Development and Structural Evaluation of N-Alkylated trans-2-Phenylcyclopropylamine-Based LSD1 Inhibitors.ChemMedChem2020
32796916Human adiponectin receptor AdipoR1 assumes closed and open structures.Commun Biol2020
32866169Genetic incorporation of non-canonical amino acid photocrosslinkers in Neisseria meningitidis: New method provides insights into the physiological function of the function-unknown NMB1345 protein.PLoS One2020
32478230Structural Basis of Activin Receptor-Like Kinase 2 (R206H) Inhibition by Bis-heteroaryl Pyrazole-Based Inhibitors for the Treatment of Fibrodysplasia Ossificans Progressiva Identified by the Integration of Ligand-Based and Structure-Based Drug Design Approaches.ACS Omega2020
32182048Fully Productive Cell-Free Genetic Code Expansion by Structure-Based Engineering of <i>Methanomethylophilus alvus</i> Pyrrolysyl-tRNA Synthetase.ACS Synth Biol2020
32348940Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method.J Mol Graph Model2020
30389576Development of a simple new flow cytometric antibody-dependent cellular cytotoxicity (ADCC) assay with excellent sensitivity.J Immunol Methods2019
30828000Bis-Heteroaryl Pyrazoles: Identification of Orally Bioavailable Inhibitors of Activin Receptor-Like Kinase-2 (R206H).Chem Pharm Bull (Tokyo)2019
31031143Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.Cell Chem Biol2019
30678326Cell-Free Protein Synthesis Using S30 Extracts from <i>Escherichia coli</i> RFzero Strains for Efficient Incorporation of Non-Natural Amino Acids into Proteins.Int J Mol Sci2019
29165680A Thermus phage protein inhibits host RNA polymerase by preventing template DNA strand loading during open promoter complex formation.Nucleic Acids Res2018
30080437JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.Epigenetics2018
30214852Structural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib.ChemistryOpen2018
29967150Distinct ways of G:U recognition by conserved tRNA binding motifs.Proc Natl Acad Sci U S A2018
30013723Characterization of oral microbiota and acetaldehyde production.J Oral Microbiol2018
30063859Ecto-F<sub>0</sub>/F<sub>1</sub> ATPase as a novel candidate of prothymosin α receptor.Expert Opin Biol Ther2018
30459470Author Correction: The selective tRNA aminoacylation mechanism based on a single Gâ¿¢U pair.Nature2018
30538184The Meningococcal Cysteine Transport System Plays a Crucial Role in <i>Neisseria meningitidis</i> Survival in Human Brain Microvascular Endothelial Cells.mBio2018
29440735Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP.Nat Chem Biol2018
29665240Thioether Macrocyclic Peptides Selected against TET1 Compact Catalytic Domain Inhibit TET1 Catalytic Activity.Chembiochem2018
29793032Phosphorylated and non-phosphorylated HCK kinase domains produced by cell-free protein expression.Protein Expr Purif2018
29661273IRS-1 acts as an endocytic regulator of IGF-I receptor to facilitate sustained IGF signaling.Elife2018
29462206Cell-free synthesis of functional antibody fragments to provide a structural basis for antibody-antigen interaction.PLoS One2018
29404990Cell-Free Protein Synthesis for Multiple Site-Specific Incorporation of Noncanonical Amino Acids Using Cell Extracts from RF-1 Deletion E. coli Strains.Methods Mol Biol2018
29684719Interhelical interactions between D92 and C218 in the cytoplasmic domain regulate proton uptake upon N-decay in the proton transport of Acetabularia rhodopsin II.J Photochem Photobiol B2018
29649565Polyamines protect nucleic acids against depurination.Int J Biochem Cell Biol2018
29309055Na<sup>+</sup>-mimicking ligands stabilize the inactive state of leukotriene B<sub>4</sub> receptor BLT1.Nat Chem Biol2018
28063932Crystal structure of Deep Vent DNA polymerase.Biochem Biophys Res Commun2017
28412353Crystal structure of RNA polymerase II from Komagataella pastoris.Biochem Biophys Res Commun2017
28336409Development and crystallographic evaluation of histone H3 peptide with N-terminal serine substitution as a potent inhibitor of lysine-specific demethylase 1.Bioorg Med Chem2017
28335556Trm5 and TrmD: Two Enzymes from Distinct Origins Catalyze the Identical tRNA Modification, m¹G37.Biomolecules2017
28126977[Three-dimensional Structure of eIF2B: A Clue to Understanding the Pathogenesis of CACH/VWM Disease].Brain Nerve2017
  • 1 - 50 of 985

Recommended Authors

Merck & Co., Inc.
Career Start Year 2002
Number of shared co-authors 4
New York University Grossman School of Medicine
Career Start Year 1998
Number of shared co-authors 9
University of St Andrews
Career Start Year 1998
Number of shared co-authors 1
Columbia University
Career Start Year 1998
Number of shared co-authors 12
University of Illinois at Chicago
Career Start Year 1998
Number of shared co-authors 1
Joint Center for Structural Genomics
Career Start Year 1997
Number of shared co-authors 4
Accelero Biostructures Inc., USA XPose Therapeutics Inc.
Career Start Year 1996
Number of shared co-authors 5
Max-Planck-Institute of Biochemistry
Career Start Year 1995
Number of shared co-authors 2
Miami University
Career Start Year 1993
Number of shared co-authors 31
University of Texas Southwestern Medical Center
Career Start Year 1993
Number of shared co-authors 7
Bridge Institute, University of Southern California
Career Start Year 1991
Number of shared co-authors 5
New York University Grossman School of Medicine
Career Start Year 1990
Number of shared co-authors 14
Joint Center for Structural Genomics
Career Start Year 1989
Number of shared co-authors 5
University of Virginia
Career Start Year 1989
Number of shared co-authors 27
Rice University
Career Start Year 1989
Number of shared co-authors 7
Joint Center for Structural Genomics
Career Start Year 1988
Number of shared co-authors 4
Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Career Start Year 1986
Number of shared co-authors 13
University of Miami Miller School of Medicine
Career Start Year 1986
Number of shared co-authors 5
National Institute of Advanced Industrial Science and Technology (AIST)
Career Start Year 1985
Number of shared co-authors 1
Institute of Child Health
Career Start Year 1982
Number of shared co-authors 3
Albert Einstein College of Medicine
Career Start Year 1982
Number of shared co-authors 9
Yokohama City University
Career Start Year 1982
Number of shared co-authors 2
University of Duisburg-Essen
Career Start Year 1981
Number of shared co-authors 4
University of Calgary
Career Start Year 1979
Number of shared co-authors 3
University of California berkeley
Career Start Year 1976
Number of shared co-authors 12
College of Agricultural and Life Sciences, University of Wisconsin-Madison
Career Start Year 1976
Number of shared co-authors 3
Rice University
Career Start Year 1974
Number of shared co-authors 13
Heartand Lung Research Institute, University of Cambridge
Career Start Year 1971
Number of shared co-authors 8
University of California San Francisco
Career Start Year 1965
Number of shared co-authors 9
university of california los angeles
Career Start Year 1963
Number of shared co-authors 9

Collaborators

Co-authored papers 22
Center for Integrative Medical Sciences
Co-authored papers 19
Co-authored papers 14
RIKEN Center for Life Science Technologies
Co-authored papers 14
Institute of Advanced Energy, Kyoto University
Co-authored papers 12
Co-authored papers 7
Co-authored papers 7
Co-authored papers 6
Institute for Protein Research, Osaka University
Co-authored papers 6
University of Cambridge
Co-authored papers 5
Laboratory IGBMC (Institute of Genetics and of Molecular and Cellular Biology)
Co-authored papers 4
Tohoku University Graduate School of Medicine, Tohoku University
Co-authored papers 3
Tokyo University of Technology
Co-authored papers 3
Los Alamos National Laboratory
Co-authored papers 3
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Co-authored papers 3
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Albert Einstein College of Medicine
Co-authored papers 3
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
University of California San Francisco
Co-authored papers 2
Rowan University School of Osteopathic Medicine
Co-authored papers 2
University of South Alabama
Co-authored papers 2
Max Planck Institute of Biochemistry
Co-authored papers 2
Co-authored papers 2
Institute for Protein Research, Osaka University
Co-authored papers 2
Advanced Center for Computing and Communication (ACCC)
Co-authored papers 2
Institute for Life and Medical Sciences, Kyoto University
Co-authored papers 2
The Scripps Research Institute, USA The Skaggs Institute for Chemical Biology
Co-authored papers 2
iHuman Institute, ShanghaiTech University
Co-authored papers 2
Weizmann Institute of Science
Co-authored papers 2