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Author Details

Geoffrey J Faulkner
Mater Research Institute - University of Queensland
2003
75
39
PMIDPaper TitleJournal TitlePublished Year
36863322Elevated L1 expression in ataxia telangiectasia likely explained by an RNA-seq batch effect.Neuron2023
37587336Transient naive reprogramming corrects hiPS cells functionally and epigenetically.Nature2023
37798118Locus-resolution analysis of L1 regulation and retrotransposition potential in mouse embryonic development.Genome Res2023
36707636Impact of retrotransposon protein L1 ORF1p expression on oncogenic pathways in hepatocellular carcinoma: the role of cytoplasmic PIN1 upregulation.Br J Cancer2023
36863322Elevated L1 expression in ataxia telangiectasia likely explained by an RNA-seq batch effect.Neuron2023
36599749Single-neuron whole genome sequencing identifies increased somatic mutation burden in Alzheimer's disease related genes.Neurobiol Aging2023
37798118Locus-resolution analysis of L1 regulation and retrotransposition potential in mouse embryonic development.Genome Res2023
37587336Transient naive reprogramming corrects hiPS cells functionally and epigenetically.Nature2023
36707636Impact of retrotransposon protein L1 ORF1p expression on oncogenic pathways in hepatocellular carcinoma: the role of cytoplasmic PIN1 upregulation.Br J Cancer2023
36599749Single-neuron whole genome sequencing identifies increased somatic mutation burden in Alzheimer's disease related genes.Neurobiol Aging2023
34463402An early proinflammatory transcriptional response to tau pathology is age-specific and foreshadows reduced tau burden.Brain Pathol2022
36463236Retrotransposon instability dominates the acquired mutation landscape of mouse induced pluripotent stem cells.Nat Commun2022
34463402An early proinflammatory transcriptional response to tau pathology is age-specific and foreshadows reduced tau burden.Brain Pathol2022
36463236Retrotransposon instability dominates the acquired mutation landscape of mouse induced pluripotent stem cells.Nat Commun2022
33971925Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome.Genome Biol2021
33971937Endogenous retroviruses in the origins and treatment of cancer.Genome Biol2021
33971925Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome.Genome Biol2021
34238343The evolving gene regulatory landscape-a tinkerer of complex creatures.Genome Biol2021
34337114Hippocampal neurogenesis mediates sex-specific effects of social isolation and exercise on fear extinction in adolescence.Neurobiol Stress2021
34680227HCV Activates Somatic L1 Retrotransposition-A Potential Hepatocarcinogenesis Pathway.Cancers (Basel)2021
34569081Processed pseudogenes: A substrate for evolutionary innovation: Retrotransposition contributes to genome evolution by propagating pseudogene sequences with rich regulatory potential throughout the genome.Bioessays2021
34392980Absence of coding somatic single nucleotide variants within well-known candidate genes in late-onset sporadic Alzheimer's Disease based on the analysis of multi-omics data.Neurobiol Aging2021
34380018No evidence of human genome integration of SARS-CoV-2 found by long-read DNA sequencing.Cell Rep2021
34380018No evidence of human genome integration of SARS-CoV-2 found by long-read DNA sequencing.Cell Rep2021
34392980Absence of coding somatic single nucleotide variants within well-known candidate genes in late-onset sporadic Alzheimer's Disease based on the analysis of multi-omics data.Neurobiol Aging2021
34569081Processed pseudogenes: A substrate for evolutionary innovation: Retrotransposition contributes to genome evolution by propagating pseudogene sequences with rich regulatory potential throughout the genome.Bioessays2021
34680227HCV Activates Somatic L1 Retrotransposition-A Potential Hepatocarcinogenesis Pathway.Cancers (Basel)2021
34238343The evolving gene regulatory landscape-a tinkerer of complex creatures.Genome Biol2021
34337114Hippocampal neurogenesis mediates sex-specific effects of social isolation and exercise on fear extinction in adolescence.Neurobiol Stress2021
33971937Endogenous retroviruses in the origins and treatment of cancer.Genome Biol2021
33186547Nanopore Sequencing Enables Comprehensive Transposable Element Epigenomic Profiling.Mol Cell2020
31848477Overcoming challenges and dogmas to understand the functions of pseudogenes.Nat Rev Genet2020
33186547Nanopore Sequencing Enables Comprehensive Transposable Element Epigenomic Profiling.Mol Cell2020
31848477Overcoming challenges and dogmas to understand the functions of pseudogenes.Nat Rev Genet2020
30692270Dynamic Methylation of an L1 Transduction Family during Reprogramming and Neurodifferentiation.Mol Cell Biol2019
31230816LINE-1 Evasion of Epigenetic Repression in Humans.Mol Cell2019
30692270Dynamic Methylation of an L1 Transduction Family during Reprogramming and Neurodifferentiation.Mol Cell Biol2019
31305886Visualization and analysis of RNA-Seq assembly graphs.Nucleic Acids Res2019
31230816LINE-1 Evasion of Epigenetic Repression in Humans.Mol Cell2019
31305886Visualization and analysis of RNA-Seq assembly graphs.Nucleic Acids Res2019
29709066Heritable L1 Retrotransposition Events During Development: Understanding Their Origins: Examination of heritable, endogenous L1 retrotransposition in mice opens up exciting new questions and research directions.Bioessays2018
30021882Retrotransposon-induced mosaicism in the neural genome.Open Biol2018
30211913Meeting report: mobile genetic elements and genome plasticity 2018.Mob DNA2018
30002735L1 retrotransposition in the soma: a field jumping ahead.Mob DNA2018
29949758L1 Retrotransposon Heterogeneity in Ovarian Tumor Cell Evolution.Cell Rep2018
29709066Heritable L1 Retrotransposition Events During Development: Understanding Their Origins: Examination of heritable, endogenous L1 retrotransposition in mice opens up exciting new questions and research directions.Bioessays2018
29643204L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis.Genome Res2018
29494619Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.PLoS Comput Biol2018
30002735L1 retrotransposition in the soma: a field jumping ahead.Mob DNA2018
30021882Retrotransposon-induced mosaicism in the neural genome.Open Biol2018
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Collaborators

Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 21
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 18
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 16
Adam D Ewing
Mater Research Institute - University of Queensland
Co-authored papers 15
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 13
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Sean M Grimmond
The University of Melbourne
Co-authored papers 11
Christine A Wells
The University of Melbourne
Co-authored papers 11
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 10
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 10
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 9
John Kenneth Baillie
Roslin Institute, University of Edinburgh
Co-authored papers 9
John S Mattick
Australia UNSW RNA Institute
Co-authored papers 7
Valerio Orlando
King Abdullah University of Science and Technology (KAUST)
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Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 7
Stefano Gustincich
Istituto Italiano di Tecnologia
Co-authored papers 6
Shiro Fukuda
Graduate School of Medicine, Osaka University
Co-authored papers 6
Charles Plessy
Okinawa Institute of Science and Technology
Co-authored papers 6
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 6
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 6
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 6
Ernst J Wolvetang
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
Co-authored papers 5
Albin Sandelin
University of Copenhagen
Co-authored papers 5
Kim M Summers
Mater Research Institute-University of Queensland, Translational Research Institute
Co-authored papers 5
Tsugumi Kawashima
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Marina Lizio
Cerevance Ltd
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Takeya Kasukawa
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Miki Kojima
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Release 1.2