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Author Details

Gloria M Sheynkman (CM4AI)
University of Virginia
2007
45
21
Standards
PMIDPaper TitleJournal TitlePublished Year
36597873Genetic Regulation of SMC Gene Expression and Splicing Predict Causal CAD Genes.Circ Res2023
37546854Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.bioRxiv2023
37191809Gain-of-Function Variomics and Multi-omics Network Biology for Precision Medicine.Methods Mol Biol2023
37197981Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest.Life Sci Alliance2023
37095564Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data.Genome Biol2023
37066387Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development.bioRxiv2023
37398049Alternative splicing is coupled to gene expression in a subset of variably expressed genes.bioRxiv2023
36993769Long-read proteogenomics to connect disease-associated sQTLs to the protein isoform effectors of disease.bioRxiv2023
36752347AD-Syn-Net: systematic identification of Alzheimer's disease-associated mutation and co-mutation vulnerabilities via deep learning.Brief Bioinform2023
34628220Interpretable artificial intelligence and exascale molecular dynamics simulations to reveal kinetics: Applications to Alzheimer's disease.Curr Opin Struct Biol2022
36457147Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics.RNA Biol2022
36202789Endothelial cell cycle state determines propensity for arterial-venous fate.Nat Commun2022
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
35960994Bridging the splicing gap in human genetics with long-read RNA sequencing: finding the protein isoform drivers of disease.Hum Mol Genet2022
35241129Enhanced protein isoform characterization through long-read proteogenomics.Genome Biol2022
34788620Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing.Cell Rep2021
32393825ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms.Nat Commun2020
33173926Characterization of a COPD-Associated <i>NPNT</i> Functional Splicing Genetic Variant in Human Lung Tissue via Long-Read Sequencing.medRxiv2020
32296183A reference map of the human binary protein interactome.Nature2020
31116991The lncRNA SLNCR Recruits the Androgen Receptor to EGR1-Bound Genes in Melanoma and Inhibits Expression of Tumor Suppressor p21.Cell Rep2019
31378069Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data.J Proteome Res2019
29598823Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing.Genome Biol2018
28284537Proteome-Scale Human Interactomics.Trends Biochem Sci2017
27049631Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation.Annu Rev Anal Chem (Palo Alto Calif)2016
27935966The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets.PLoS Genet2016
26704769Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy.J Proteome Res2016
26871637Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.Cell2016
26418581Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search.J Proteome Res2015
24175627Large-scale mass spectrometric detection of variant peptides resulting from nonsynonymous nucleotide differences.J Proteome Res2014
25053745sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments.Bioinformatics2014
25149441Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations.BMC Genomics2014
23629695Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq.Mol Cell Proteomics2013
22714949Absolute quantification of prion protein (90-231) using stable isotope-labeled chymotryptic peptide standards in a LC-MRM AQUA workflow.J Am Soc Mass Spectrom2012
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Collaborators

Lloyd M Smith
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 10
Michael R Shortreed
University of Wisconsin-Madison
Co-authored papers 8
Erin D Jeffery
Agenus Inc, American Society for Mass Spectrometry, Hartwick College, Human Proteome Organisation, Large Scale Biology Corp, University of Virginia
Co-authored papers 6
Brian L Frey
University of Wisconsin-Madison, 1101 University Ave
Co-authored papers 5
Elizabeth Tseng
University of Washington
Co-authored papers 4
Karen K Hirschi
University of Virginia School of Medicine
Co-authored papers 4
Marc Vidal
Blavatnik Institute, Harvard Medical School
Co-authored papers 4
Ana Conesa
Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
Co-authored papers 3
Elizabeth A Nelson
Cardiovascular Research Center, University of Virginia School of Medicine
Co-authored papers 3
Gael Genet
University of Virginia School of Medicine
Co-authored papers 3
Bipul R Acharya
Berne Cardiovascular Research Center, University of Virginia School of Medicine
Co-authored papers 3
Peter J Castaldi
Harvard Medical School
Co-authored papers 3
Nidhi Sahni
The University of Texas MD Anderson Cancer Center
Co-authored papers 3
Yu Xia
College of Information Engineering, Zhejiang University of Technology
Co-authored papers 2
Kerstin Spirohn
Center for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute
Co-authored papers 2
Robert J Millikin
Morgridge Institute for Research
Co-authored papers 2
Anthony J Cesnik
University of Wisconsin-Madison
Co-authored papers 2
Hagen Tilgner
Brain and Mind Research Institute
Co-authored papers 2
Frederick P Roth
University of Toronto
Co-authored papers 2
Mark Diekhans
Genomics Institute, University of California Santa Cruz
Co-authored papers 2
Melissa L Smith
University of Louisville
Co-authored papers 2
Patrick Aloy
Institucio Catalana de Recerca i Estudis Avancats (ICREA)
Co-authored papers 2
Mark Scalf
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 2
Hema Vasavada
Cardiovascular Research Center, Yale University School of Medicine
Co-authored papers 2
Nicholas W Chavkin
University of Virginia School of Medicine
Co-authored papers 2
Zeynep Coban Akdemir
Baylor College of Medicine
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Charles R Farber
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Release 1.2