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Author Details

Travers Ching
Adaptive Biotechnologies
2014
29
19
PMIDPaper TitleJournal TitlePublished Year
37586370Multimodal, broadly neutralizing antibodies against SARS-CoV-2 identified by high-throughput native pairing of BCRs from bulk B cells.Cell Chem Biol2023
34838841Glycerol-assisted degradation of dibenzothiophene by Paraburkholderia sp. C3 is associated with polyhydroxyalkanoate granulation.Chemosphere2022
34709929Minimal Residual Disease Dynamics after Venetoclax-Obinutuzumab Treatment: Extended Off-Treatment Follow-up From the Randomized CLL14 Study.J Clin Oncol2021
32605647Analytical evaluation of the clonoSEQ Assay for establishing measurable (minimal) residual disease in acute lymphoblastic leukemia, chronic lymphocytic leukemia, and multiple myeloma.BMC Cancer2020
31266816A Novel FGFR3 Splice Variant Preferentially Expressed in African American Prostate Cancer Drives Aggressive Phenotypes and Docetaxel Resistance.Mol Cancer Res2019
30242023Multimodal Meta-Analysis of 1,494 Hepatocellular Carcinoma Samples Reveals Significant Impact of Consensus Driver Genes on Phenotypes.Clin Cancer Res2019
31557190Maternal cardiovascular-related single nucleotide polymorphisms, genes, and pathways associated with early-onset preeclampsia.PLoS One2019
29218910Pan-cancer analysis of expressed somatic nucleotide variants in long intergenic non-coding RNA.Pac Symp Biocomput2018
29916082Characterization of Plant Glycoproteins: Analysis of Plant Glycopeptide Mass Spectrometry Data with plantGlycoMS, a Package in the R Statistical Computing Environment.Methods Mol Biol2018
30459309Using single nucleotide variations in single-cell RNA-seq to identify subpopulations and genotype-phenotype linkage.Nat Commun2018
29618526Opportunities and obstacles for deep learning in biology and medicine.J R Soc Interface2018
29634719Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data.PLoS Comput Biol2018
28665395Alternative splicing promotes tumour aggressiveness and drug resistance in African American prostate cancer.Nat Commun2017
28133571Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization.PeerJ2017
28952599Corrigendum: Alternative splicing promotes tumour aggressiveness and drug resistance in African American prostate cancer.Nat Commun2017
28504715Human DBR1 modulates the recycling of snRNPs to affect alternative RNA splicing and contributes to the suppression of cancer development.Oncogene2017
27322459Pan-Cancer Analyses Reveal Long Intergenic Non-Coding RNAs Relevant to Tumor Diagnosis, Subtyping and Prognosis.EBioMedicine2016
27849024Analysis of Microarray Data on Gene Expression and Methylation to Identify Long Non-coding RNAs in Non-small Cell Lung Cancer.Sci Rep2016
27708664Single-Cell Transcriptomics Bioinformatics and Computational Challenges.Front Genet2016
27151270Site-Specific N-Glycosylation Characterization of Windmill Palm Tree Peroxidase Using Novel Tools for Analysis of Plant Glycopeptide Mass Spectrometry Data.J Proteome Res2016
25806090Genome-scale hypomethylation in the cord blood DNAs associated with early onset preeclampsia.Clin Epigenetics2015
26697116Non-coding yet non-trivial: a review on the computational genomics of lincRNAs.BioData Min2015
25924064Th17 cells transdifferentiate into regulatory T cells during resolution of inflammation.Nature2015
25861082Using epigenomics data to predict gene expression in lung cancer.BMC Bioinformatics2015
24346234Quartet analysis of putative horizontal gene transfer in Crenarchaeota.J Mol Evol2014
24944161Genome-wide hypermethylation coupled with promoter hypomethylation in the chorioamniotic membranes of early onset pre-eclampsia.Mol Hum Reprod2014
25344330mirMark: a site-level and UTR-level classifier for miRNA target prediction.Genome Biol2014
25246651Power analysis and sample size estimation for RNA-Seq differential expression.RNA2014
25233347A novel model to combine clinical and pathway-based transcriptomic information for the prognosis prediction of breast cancer.PLoS Comput Biol2014
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Collaborators

Lana X Garmire
University of Michigan ann arbor
Co-authored papers 20
David L Tabb
Co-authored papers 2
Stefan Knapp
Institute of Pharmaceutical Chemistry, Goethe University
Co-authored papers 2
Rong Fan
Institute of Pathogens and Vectors, Dali University
Co-authored papers 2
Gail L Rosen
Drexel University
Co-authored papers 1
Yanjun Qi
University of Virginiagrid.27755.32
Co-authored papers 1
Marwin Segler
Westfalische Wilhelms-Universitat Munster, Organisch-Chemisches Institut
Co-authored papers 1
Alexandr A Kalinin
Broad Institute of Harvard and MIT
Co-authored papers 1
Casey T Weaver
University of Alabama at Birmingham
Co-authored papers 1
Jack Lanchantin
University of Virginia
Co-authored papers 1
David Garmire
Co-authored papers 1
Brett K Beaulieu-Jones
University of Chicago
Co-authored papers 1
Anshul Kundaje
Stanford University.
Co-authored papers 1
Simina M Boca
Georgetown University Medical Center
Co-authored papers 1
Courtney Wilkins
Center for Innate Immunity and Immune Disease, University of Washington
Co-authored papers 1
David DeCaprio
Broad Institute of Harvard and MIT
Co-authored papers 1
Laura K Wiley
University of Colorado Anschutz Medical Campus
Co-authored papers 1
Daniel S Himmelstein
University of Pennsylvania
Co-authored papers 1
Anthony Gitter
University of Wisconsin
Co-authored papers 1
Zhi-Jie Zheng
Peking University School of Public Health
Co-authored papers 1
Yotam Drier
Co-authored papers 1
Evan M Cofer
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 1
Casey S Greene
Co-authored papers 1
Noah W Palm
Yale University School of Medicine
Co-authored papers 1
Michael Zietz
University of Pennsylvania
Co-authored papers 1
Yifan Peng
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 1
Bradley E Bernstein
Broad Institute of MIT and Harvard
Co-authored papers 1
Paul-Michael Agapow
Imperial College London
Co-authored papers 1
Srinivas C Turaga
Howard Hughes Medical Institute
Co-authored papers 1
Sanjay J Swamidass
Washington University School of Medicine
Co-authored papers 1
Release 1.2