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Author Details

Norman E Davey
The Institute of Cancer Research
2006
84
46
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36623987SLiM-binding pockets: an attractive target for broad-spectrum antivirals.Trends Biochem Sci2023
37704626Identification of motif-based interactions between SARS-CoV-2 protein domains and human peptide ligands pinpoint antiviral targets.Nat Commun2023
37219487Large-scale phosphomimetic screening identifies phospho-modulated motif-based protein interactions.Mol Syst Biol2023
37371487xProtCAS: A Toolkit for Extracting Conserved Accessible Surfaces from Protein Structures.Biomolecules2023
37400558Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions.Nat Methods2023
37100772Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs.Nat Commun2023
37099901The next wave of interactomics: Mapping the SLiM-based interactions of the intrinsically disordered proteome.Curr Opin Struct Biol2023
34718738The Eukaryotic Linear Motif resource: 2022 release.Nucleic Acids Res2022
36504386How viral proteins bind short linear motifs and intrinsically disordered domains.Essays Biochem2022
36171301A functional interaction between liprin-α1 and B56γ regulatory subunit of protein phosphatase 2A supports tumor cell motility.Commun Biol2022
35044719Proteome-scale mapping of binding sites in the unstructured regions of the human proteome.Mol Syst Biol2022
34850135DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.Nucleic Acids Res2022
35168834ProP-PD for proteome-wide motif-mediated interaction discovery.Trends Biochem Sci2022
33237329MobiDB: intrinsically disordered proteins in 2021.Nucleic Acids Res2021
34799561Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities.Nat Commun2021
32350110Phosphorylation-dependent substrate selectivity of protein kinase B (AKT1).J Biol Chem2020
31713636DisProt: intrinsic protein disorder annotation in 2020.Nucleic Acids Res2020
32976810Comprehensive Analysis of G1 Cyclin Docking Motif Sequences that Control CDK Regulatory Potency In Vivo.Curr Biol2020
32645368Systematic Discovery of Short Linear Motifs Decodes Calcineurin Phosphatase Signaling.Mol Cell2020
32507889The articles.ELM resource: simplifying access to protein linear motif literature by annotation, text-mining and classification.Database (Oxford)2020
31003202The functional importance of structure in unstructured protein regions.Curr Opin Struct Biol2019
31824649An intrinsically disordered proteins community for ELIXIR.F1000Res2019
31585692A Consensus Binding Motif for the PP4 Protein Phosphatase.Mol Cell2019
31266884Systematic identification of recognition motifs for the hub protein LC8.Life Sci Alliance2019
31433993PP1 and PP2A Use Opposite Phospho-dependencies to Control Distinct Processes at the Kinetochore.Cell Rep2019
31060926SIRT3 controls brown fat thermogenesis by deacetylation regulation of pathways upstream of UCP1.Mol Metab2019
29136216The eukaryotic linear motif resource - 2018 update.Nucleic Acids Res2018
29873773PSSMSearch: a server for modeling, visualization, proteome-wide discovery and annotation of protein motif specificity determinants.Nucleic Acids Res2018
29432148<sup>15</sup>N detection harnesses the slow relaxation property of nitrogen: Delivering enhanced resolution for intrinsically disordered proteins.Proc Natl Acad Sci U S A2018
29590613A Screen for Candidate Targets of Lysine Polyphosphorylation Uncovers a Conserved Network Implicated in Ribosome Biogenesis.Cell Rep2018
29290611The Ebola Virus Nucleoprotein Recruits the Host PP2A-B56 Phosphatase to Activate Transcriptional Support Activity of VP30.Mol Cell2018
29136219MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.Nucleic Acids Res2018
27997202Peptigram: A Web-Based Application for Peptidomics Data Visualization.J Proteome Res2017
28387819SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions.Nucleic Acids Res2017
27899601DisProt 7.0: a major update of the database of disordered proteins.Nucleic Acids Res2017
28002650Discovery of short linear motif-mediated interactions through phage display of intrinsically disordered regions of the human proteome.FEBS J2017
27965415Corrigendum: DisProt 7.0: a major update of the database of disordered proteins.Nucleic Acids Res2017
27085803ProViz-a web-based visualization tool to investigate the functional and evolutionary features of protein sequences.Nucleic Acids Res2016
26615199ELM 2016--data update and new functionality of the eukaryotic linear motif resource.Nucleic Acids Res2016
27716480Building a Regulatory Network with Short Linear Sequence Motifs: Lessons from the Degrons of the Anaphase-Promoting Complex.Mol Cell2016
27939943The Mitotic Checkpoint Complex Requires an Evolutionary Conserved Cassette to Bind and Inhibit Active APC/C.Mol Cell2016
27453045A Conserved Motif Provides Binding Specificity to the PP2A-B56 Phosphatase.Mol Cell2016
25381059Acetylome profiling reveals overlap in the regulation of diverse processes by sirtuins, gcn5, and esa1.Mol Cell Proteomics2015
26626130Motif co-regulation and co-operativity are common mechanisms in transcriptional, post-transcriptional and post-translational regulation.Cell Commun Signal2015
26589632Short linear motifs - ex nihilo evolution of protein regulation.Cell Commun Signal2015
25669885The ABBA motif binds APC/C activators and is shared by APC/C substrates and regulators.Dev Cell2015
24214962The eukaryotic linear motif resource ELM: 10 years and counting.Nucleic Acids Res2014
25474213The HIV mutation browser: a resource for human immunodeficiency virus mutagenesis and polymorphism data.PLoS Comput Biol2014
25287299Multiple mechanisms determine the order of APC/C substrate degradation in mitosis.J Cell Biol2014
25038412A million peptide motifs for the molecular biologist.Mol Cell2014
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Collaborators

Denis C Shields
Conway Institute of Biomolecular and Biomedical Research, University College Dublin
Co-authored papers 20
Peter Tompa
VIB-VUB Center for Structural Biology
Co-authored papers 8
Zsuzsanna Dosztányi
Co-authored papers 8
Damiano Piovesan
University of Padova
Co-authored papers 8
Silvio C E Tosatto
University of Padova
Co-authored papers 8
Izabella Krystkowiak
Institute of Cancer Research
Co-authored papers 7
Francesca Diella
Co-authored papers 7
Federica Quaglia
University of Padova
Co-authored papers 6
B??lint M??sz??ros
St Jude Children's Research Hospital
Co-authored papers 6
Marco Necci
Co-authored papers 6
Rita Pancsa
Institute of Enzymology, HUN-REN Research Centre for Natural Sciences
Co-authored papers 5
Radoslav Davidovic
Institute of Nuclear Sciences Vinca, University of Belgrade
Co-authored papers 4
Nevena Veljkovic
Heliant Ltd
Co-authored papers 4
Maria Cristina Aspromonte
University of Padova
Co-authored papers 3
Agnes Tantos
Institute of Enzymology, HUN-REN Research Centre for Natural Sciences
Co-authored papers 3
Alan Keith Dunker
Center for Computational Biology, Indiana University School of Medicine
Co-authored papers 3
Beata Szabo
Institute of Enzymology, HUN-REN Research Centre for Natural Sciences
Co-authored papers 3
Michael Downey
Ottawa Institute of Systems Biology, University of Ottawa
Co-authored papers 3
Emma Bondy-Chorney
University of Ottawa, Canada Ottawa Institute of Systems Biology
Co-authored papers 2
Yuka Sai
Department of Cellular and Molecular Medicine and Ottawa Institute of Systems Biology
Co-authored papers 2
Patrick Ruch
University of Applied Sciences and Arts of Western Switzerland (HES-SO).
Co-authored papers 2
Madan Mohan Babu
St. Jude Children's Research Hospital
Co-authored papers 2
Daniel B Roche
Universita degli Studi di Milano - Computer Science Department - AnacletoLab
Co-authored papers 2
Sandra Orchard
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Stephan Becker
Institute of Virology, Philipps University Marburg
Co-authored papers 2
Jeffrey R Johnson
Gladstone Institutes
Co-authored papers 2
Vladimir N Uversky
Morsani College of Medicine, University of South Florida
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Nevan J Krogan (CM4AI)
University of California San Francisco
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Release 1.2