Author details

Full Name

Brady Bernard

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37202426	Extraordinary clinical response to ibrutinib in low-grade ovarian cancer guided by organoid drug testing.		2023
36344483	Uterine Inflammatory Myofibroblastic Tumors: Proposed Risk Stratification Model Using Integrated Clinicopathologic and Molecular Analysis.	American Journal of Surgical Pathology	2023
37344474	A phase Ib trial of pembrolizumab plus paclitaxel or flat-dose capecitabine in 1st/2nd line metastatic triple-negative breast cancer.		2023
35086949	Changes in T-cell subsets and clonal repertoire during chemoimmunotherapy with pembrolizumab and paclitaxel or capecitabine for metastatic triple-negative breast cancer.	Journal for ImmunoTherapy of Cancer	2022
35439168	PD-1 and ICOS coexpression identifies tumor-reactive CD4+ T cells in human solid tumors.	Journal of Clinical Investigation	2022
35413272	Transcriptomic profiles of neoantigen-reactive T cells in human gastrointestinal cancers.	Cancer Cell	2022
33413574	Multiplex immunofluorescence to measure dynamic changes in tumor-infiltrating lymphocytes and PD-L1 in early-stage breast cancer.	Breast Cancer Research	2021
34168978	A Case Series of Metastatic Metaplastic Breast Carcinoma Treated With Anti-PD-1 Therapy.	Frontiers in Oncology	2021
33796412	Germinal center reactions in tertiary lymphoid structures associate with neoantigen burden, humoral immunity and long-term survivorship in pancreatic cancer.	Oncoimmunology	2021
33837055	Enhancing clinical and immunological effects of anti-PD-1 with belapectin, a galectin-3 inhibitor.	Journal for ImmunoTherapy of Cancer	2021
33820811	Robust Antitumor Immunity in a Patient with Metastatic Colorectal Cancer Treated with Cytotoxic Regimens.	Cancer Immunology Research	2021
33596250	Developing an enhanced 7-color multiplex IHC protocol to dissect immune infiltration in human cancers.	PLoS ONE	2021
33594075	Neoadjuvant anti-OX40 (MEDI6469) therapy in patients with head and neck squamous cell carcinoma activates and expands antigen-specific tumor-infiltrating T cells.	Nature Communications	2021
32866185	Transcriptional and immunohistological assessment of immune infiltration in pancreatic cancer.	PLoS One	2020
30833390	Genomic and molecular characterization of preterm birth.	Proc Natl Acad Sci U S A	2019
29596783	Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas.	Cell Syst	2018
28170390	Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression.	PLoS Comput Biol	2017
28331002	Personalized In Vitro and In Vivo Cancer Models to Guide Precision Medicine.	Cancer Discov	2017
27587659	Combining dependent P-values with an empirical adaptation of Brown's method.	Bioinformatics	2016
27426982	Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.	Cell Syst	2016
27047537	Using Incomplete Trios to Boost Confidence in Family Based Association Studies.	Front Genet	2016
26061751	Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.	N Engl J Med	2015
25737557	Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression.	Proc Natl Acad Sci U S A	2015
26679347	CloudForest: A Scalable and Efficient Random Forest Implementation for Biological Data.	PLoS One	2015
24794443	CTCF haploinsufficiency destabilizes DNA methylation and predisposes to cancer.	Cell Rep	2014
25378323	Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers.	Nucleic Acids Res	2014
24591535	Synthetic lethal screens as a means to understand and treat MYC-driven cancers.	Cold Spring Harb Perspect Med	2014
24120142	The somatic genomic landscape of glioblastoma.	Cell	2013
22952610	Increasing coverage of transcription factor position weight matrices through domain-level homology.	PLoS One	2012
19127590	A generalized knowledge-based discriminatory function for biomolecular interactions.	Proteins	2009
18161991	Conformational changes below the Tm: molecular dynamics studies of the thermal pretransition of ribonuclease A.	Biochemistry	2008
16157882	Characterization of a possible amyloidogenic precursor in glutamine-repeat neurodegenerative diseases.	Proceedings of the National Academy of Sciences of the United States of America	2005