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Author Details

Hirotada Mori
Nara Institute of Science and Technology
1984
175
61
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37379700Functional analysis of Rickettsia monacensis strain humboldt folA dihydrofolate reductase gene via complementation assay.Ticks Tick Borne Dis2023
36144436Past, Present, and Future of Genome Modification in <i>Escherichia coli</i>.Microorganisms2022
33926096Cell Lysis Directed by SulA in Response to DNA Damage in <i>Escherichia coli</i>.Int J Mol Sci2021
33872303Bacterial persisters are a stochastically formed subpopulation of low-energy cells.PLoS Biol2021
33252330Evolved bacterial resistance against fluoropyrimidines can lower chemotherapy impact in the <i>Caenorhabditis elegans</i> host.Elife2020
31168023Optimization of RK2-based gene introduction system for Bacillus subtilis.J Gen Appl Microbiol2019
29485997Update of thermotolerant genes essential for survival at a critical high temperature in Escherichia coli.PLoS One2018
30341391A cAMP/CRP-controlled mechanism for the incorporation of extracellular ADP-glucose in Escherichia coli involving NupC and NupG nucleoside transporters.Sci Rep2018
29555994Extensive impact of non-antibiotic drugs on human gut bacteria.Nature2018
28708379Chemical Genomics, Structure Elucidation, and in Vivo Studies of the Marine-Derived Anticlostridial Ecteinamycin.ACS Chem Biol2017
28328998Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function.PLoS One2017
28492282Accumulation of heme biosynthetic intermediates contributes to the antibacterial action of the metalloid tellurite.Nat Commun2017
29020004iML1515, a knowledgebase that computes Escherichia coli traits.Nat Biotechnol2017
26792836A robust platform for chemical genomics in bacterial systems.Mol Biol Cell2016
27808179In vitro membrane protein synthesis inside Sec translocon-reconstituted cell-sized liposomes.Sci Rep2016
27013550Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling.DNA Res2016
25399415GenoBase: comprehensive resource database of Escherichia coli K-12.Nucleic Acids Res2015
26621467Toward Network Biology in E. coli Cell.Adv Exp Med Biol2015
25636612Identification of essential genes and synthetic lethal gene combinations in Escherichia coli K-12.Methods Mol Biol2015
24365232What hath DNA wrought? CRISPR-CAS gene silencing and engineering from bacteria to humans: comment on "Diversity, evolution, and therapeutic applications of small RNAs in prokaryotic and eukaryotic immune systems" by Edwin L. Cooper and Nicola Overstreet.Phys Life Rev2014
25497125Genome-scale identification and characterization of moonlighting proteins.Biol Direct2014
25512115Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo.BMC Genomics2014
25006232Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing.mBio2014
24964927Colony-live--a high-throughput method for measuring microbial colony growth kinetics--reveals diverse growth effects of gene knockouts in Escherichia coli.BMC Microbiol2014
25188023Systematic production of inactivating and non-inactivating suppressor mutations at the relA locus that compensate the detrimental effects of complete spot loss and affect glycogen content in Escherichia coli.PLoS One2014
24740007Integrating reductive and synthetic approaches in biology using man-made cell-like compartments.Sci Rep2014
23292777Genome-wide screening with hydroxyurea reveals a link between nonessential ribosomal proteins and reactive oxygen species production.J Bacteriol2013
24565082Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model.BMC Syst Biol2013
24463526Development of a system for discovery of genetic interactions for essential genes in Escherichia coli K-12.Genes Genet Syst2013
23594456Crucial roles of MicA and RybB as vital factors for Ï¿-dependent cell lysis in Escherichia coli long-term stationary phase.J Mol Microbiol Biotechnol2013
23457245The tRNA thiolation pathway modulates the intracellular redox state in Escherichia coli.J Bacteriol2013
23537328GlgS, described previously as a glycogen synthesis control protein, negatively regulates motility and biofilm formation in Escherichia coli.Biochem J2013
22276107Comparative genomics and drug resistance of a geographic variant of ST239 methicillin-resistant Staphylococcus aureus emerged in Russia.PLoS One2012
22750467Glycogen is the primary source of glucose during the lag phase of E. coli proliferation.Biochim Biophys Acta2012
22721472Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using (13)C metabolic flux analysis.Microb Cell Fact2012
21864382Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli.BMC Genomics2011
20458400Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments.Mol Biosyst2010
21155021Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli.J Bioinform Comput Biol2010
20701780The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology.BMC Genomics2010
18718549Systematic genome-wide scanning for genes involved in ATP generation in Escherichia coli.Metab Eng2009
20029369Update on the Keio collection of Escherichia coli single-gene deletion mutants.Mol Syst Biol2009
20023715Computational and systems biology.Mol Biosyst2009
19756045Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism.Mol Syst Biol2009
19452048Predicting essential genes based on network and sequence analysis.Mol Biosyst2009
19552708Glutathione production by efficient ATP-regenerating Escherichia coli mutants.FEMS Microbiol Lett2009
19231892Essential core of protein-protein interaction network in Escherichia coli.J Proteome Res2009
18828007The outer membrane TolC is involved in cysteine tolerance and overproduction in Escherichia coli.Appl Microbiol Biotechnol2009
18392967The construction of systematic in-frame, single-gene knockout mutant collection in Escherichia coli K-12.Methods Mol Biol2008
19425146Phenotype profiling of single gene deletion mutants of E. coli using Biolog technology.Genome Inform2008
19160513High-throughput, quantitative analyses of genetic interactions in E. coli.Nat Methods2008
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Collaborators

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Co-authored papers 21
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Nara Institute of Science and Technology
Co-authored papers 10
Osaka University
Co-authored papers 10
Department of Research and Development, TAUNS Laboratories Inc.
Co-authored papers 10
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Osaka University
Co-authored papers 2
University of Minnesota - Twin Cities
Co-authored papers 2
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Purdue University
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Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 2
Vanderbilt University Medical Center
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Center for Genomic Science Innovation, University of Wisconsin-Madison
Co-authored papers 1
.The Emmes Corporation
Co-authored papers 1
Stanford University
Co-authored papers 1
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University of Toronto
Co-authored papers 1
University of California san francisco
Co-authored papers 1
J Craig Venter Institute
Co-authored papers 1
University of California San Francisco
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University of Regina
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University of Wurzburg
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Shinshu University School of Medicine
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Lawrence Berkeley National Laboratory
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Texas A&M University, College Station
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