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Author Details

Sven Heinz
U.C. San Diego School of Medicine
2000
59
32
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37403796Combining TSS-MPRA and sensitive TSS profile dissimilarity scoring to study the sequence determinants of transcription initiation.Nucleic Acids Res2023
37403796Combining TSS-MPRA and sensitive TSS profile dissimilarity scoring to study the sequence determinants of transcription initiation.Nucleic Acids Res2023
37492105Human gain-of-function variants in HNF1A confer protection from diabetes but independently increase hepatic secretion of atherogenic lipoproteins.Cell Genom2023
37492105Human gain-of-function variants in HNF1A confer protection from diabetes but independently increase hepatic secretion of atherogenic lipoproteins.Cell Genom2023
36267125MEPP: more transparent motif enrichment by profiling positional correlations.NAR Genom Bioinform2022
36267125MEPP: more transparent motif enrichment by profiling positional correlations.NAR Genom Bioinform2022
36460641DOT1L regulates chamber-specific transcriptional networks during cardiogenesis and mediates postnatal cell cycle withdrawal.Nat Commun2022
36460641DOT1L regulates chamber-specific transcriptional networks during cardiogenesis and mediates postnatal cell cycle withdrawal.Nat Commun2022
33303689Ncor2/PPARα-Dependent Upregulation of MCUb in the Type 2 Diabetic Heart Impacts Cardiac Metabolic Flexibility and Function.Diabetes2021
33748781Purification of mouse hepatic non-parenchymal cells or nuclei for use in ChIP-seq and other next-generation sequencing approaches.STAR Protoc2021
33836156TOP1 inhibition therapy protects against SARS-CoV-2-induced lethal inflammation.Cell2021
33718886An optimized protocol for rapid, sensitive and robust on-bead ChIP-seq from primary cells.STAR Protoc2021
33303689Ncor2/PPARα-Dependent Upregulation of MCUb in the Type 2 Diabetic Heart Impacts Cardiac Metabolic Flexibility and Function.Diabetes2021
34553213Bias-invariant RNA-sequencing metadata annotation.Gigascience2021
33718886An optimized protocol for rapid, sensitive and robust on-bead ChIP-seq from primary cells.STAR Protoc2021
33836156TOP1 inhibition therapy protects against SARS-CoV-2-induced lethal inflammation.Cell2021
33748781Purification of mouse hepatic non-parenchymal cells or nuclei for use in ChIP-seq and other next-generation sequencing approaches.STAR Protoc2021
34553213Bias-invariant RNA-sequencing metadata annotation.Gigascience2021
31598718SEAweb: the small RNA Expression Atlas web application.Nucleic Acids Res2020
31598718SEAweb: the small RNA Expression Atlas web application.Nucleic Acids Res2020
31899206IL-17 signaling in steatotic hepatocytes and macrophages promotes hepatocellular carcinoma in alcohol-related liver disease.J Hepatol2020
31982409Identification of Lineage-Specific Transcription Factors That Prevent Activation of Hepatic Stellate Cells and Promote Fibrosis Resolution.Gastroenterology2020
32456667ARTDeco: automatic readthrough transcription detection.BMC Bioinformatics2020
33299999Topoisomerase 1 inhibition therapy protects against SARS-CoV-2-induced inflammation and death in animal models.bioRxiv2020
31899206IL-17 signaling in steatotic hepatocytes and macrophages promotes hepatocellular carcinoma in alcohol-related liver disease.J Hepatol2020
31982409Identification of Lineage-Specific Transcription Factors That Prevent Activation of Hepatic Stellate Cells and Promote Fibrosis Resolution.Gastroenterology2020
33299999Topoisomerase 1 inhibition therapy protects against SARS-CoV-2-induced inflammation and death in animal models.bioRxiv2020
32456667ARTDeco: automatic readthrough transcription detection.BMC Bioinformatics2020
30885966Generating a Three-Dimensional Genome from <i>Xenopus</i> with Hi-C.Cold Spring Harb Protoc2019
31649059Identification and dynamic quantification of regulatory elements using total RNA.Genome Res2019
31587991Liver-Derived Signals Sequentially Reprogram Myeloid Enhancers to Initiate and Maintain Kupffer Cell Identity.Immunity2019
31371502Paradoxical association of TET loss of function with genome-wide DNA hypomethylation.Proc Natl Acad Sci U S A2019
30838976Circular synthesized CRISPR/Cas gRNAs for functional interrogations in the coding and noncoding genome.Elife2019
30885966Generating a Three-Dimensional Genome from <i>Xenopus</i> with Hi-C.Cold Spring Harb Protoc2019
31649059Identification and dynamic quantification of regulatory elements using total RNA.Genome Res2019
31587991Liver-Derived Signals Sequentially Reprogram Myeloid Enhancers to Initiate and Maintain Kupffer Cell Identity.Immunity2019
31371502Paradoxical association of TET loss of function with genome-wide DNA hypomethylation.Proc Natl Acad Sci U S A2019
30838976Circular synthesized CRISPR/Cas gRNAs for functional interrogations in the coding and noncoding genome.Elife2019
30146161Transcription Elongation Can Affect Genome 3D Structure.Cell2018
30206152Deconvolution of pro- and antiviral genomic responses in Zika virus-infected and bystander macrophages.Proc Natl Acad Sci U S A2018
30146161Transcription Elongation Can Affect Genome 3D Structure.Cell2018
29861157Heterochromatin-Encoded Satellite RNAs Induce Breast Cancer.Mol Cell2018
29861157Heterochromatin-Encoded Satellite RNAs Induce Breast Cancer.Mol Cell2018
30206152Deconvolution of pro- and antiviral genomic responses in Zika virus-infected and bystander macrophages.Proc Natl Acad Sci U S A2018
28287406Mesothelin/mucin 16 signaling in activated portal fibroblasts regulates cholestatic liver fibrosis.J Clin Invest2017
28287406Mesothelin/mucin 16 signaling in activated portal fibroblasts regulates cholestatic liver fibrosis.J Clin Invest2017
27127234Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation.Science2016
27127234Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation.Science2016
27762356Genome evolution in the allotetraploid frog Xenopus laevis.Nature2016
27762356Genome evolution in the allotetraploid frog Xenopus laevis.Nature2016
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Collaborators

Christopher Benner
Michigan State University College of Human Medicine
Co-authored papers 29
Christopher K Glass
University of California San Diego
Co-authored papers 21
Nathanael J Spann
Co-authored papers 6
Renato Carneiro de Freitas Chaves
Hospital Israelita Albert Einstein
Co-authored papers 6
Ivan Marazzi
Center for Epigenetics and Metabolism, University of California irvine
Co-authored papers 5
Minna U Kaikkonen
Co-authored papers 5
Michael Rehli
University Hospital Regensburg
Co-authored papers 5
Sascha H Duttke
College of Veterinary Medicine, Washington State University
Co-authored papers 5
Casey E Romanoski
Co-authored papers 5
Adolfo Garc??a-Sastre
Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Randy A Albrecht
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
David A Brenner
Co-authored papers 3
Cornelis Murre
University of California
Co-authored papers 3
Tatiana Kisseleva
Co-authored papers 3
Jason S Seidman
University of California San Diego
Co-authored papers 3
Ty D Troutman
University of Cincinnati School of Medicine
Co-authored papers 3
Jessica Sook Yuin Ho
Icahn School of Medicine at Mount Sinai, Duke-NUS Medical School
Co-authored papers 3
Yin C Lin
Baylor Institute for Immunology Research
Co-authored papers 3
Kris M White
Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)
Co-authored papers 3
Alexander Rialdi
Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Nan Zhao
Department of Computer Science and Informatics Institute, University of Missouri
Co-authored papers 3
Matthew T Weirauch
University of Cincinnati College of Medicine
Co-authored papers 3
Laura Campisi
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Teresa Aydillo
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Sara Brin Rosenthal
Center for Computational Biology and Bioinformatics, University of California
Co-authored papers 2
Soner Yildiz
University of Geneva
Co-authored papers 2
Robert Sebra
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
David L Corcoran
The University of North Carolina at Chapel Hill
Co-authored papers 2
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Release 1.2