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Author Details

Eric L Van Nostrand
University of California
2005
48
28
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36321651RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.Nucleic Acids Res2023
36321651RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins.Nucleic Acids Res2023
36973285Rewired m<sup>6</sup>A epitranscriptomic networks link mutant p53 to neoplastic transformation.Nat Commun2023
36759613Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death.Nat Commun2023
37228754exRNA-eCLIP intersection analysis reveals a map of extracellular RNA binding proteins and associated RNAs across major human biofluids and carriers.Cell Genom2023
36973285Rewired m<sup>6</sup>A epitranscriptomic networks link mutant p53 to neoplastic transformation.Nat Commun2023
37228754exRNA-eCLIP intersection analysis reveals a map of extracellular RNA binding proteins and associated RNAs across major human biofluids and carriers.Cell Genom2023
36759613Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death.Nat Commun2023
35322209Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq.Nat Protoc2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
35322209Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq.Nat Protoc2022
35047007Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop.Front Genet2022
35313591Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.Res Sq2022
35233578Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.bioRxiv2022
35263585Identification of the global miR-130a targetome reveals a role for TBL1XR1 in hematopoietic stem cell self-renewal and t(8;21) AML.Cell Rep2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
35047007Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop.Front Genet2022
35313591Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.Res Sq2022
35233578Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.bioRxiv2022
35263585Identification of the global miR-130a targetome reveals a role for TBL1XR1 in hematopoietic stem cell self-renewal and t(8;21) AML.Cell Rep2022
33402748Author Correction: A large-scale binding and functional map of human RNA-binding proteins.Nature2021
34297039ADAR and hnRNPC deficiency synergize in activating endogenous dsRNA-induced type I IFN responses.J Exp Med2021
33402748Author Correction: A large-scale binding and functional map of human RNA-binding proteins.Nature2021
34297039ADAR and hnRNPC deficiency synergize in activating endogenous dsRNA-induced type I IFN responses.J Exp Med2021
32393832Pooled CRISPR screens with imaging on microraft arrays reveals stress granule-regulatory factors.Nat Methods2020
32252787Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.Genome Biol2020
32393832Pooled CRISPR screens with imaging on microraft arrays reveals stress granule-regulatory factors.Nat Methods2020
34109316An in vivo genome-wide CRISPR screen identifies the RNA-binding protein Staufen2 as a key regulator of myeloid leukemia.Nat Cancer2020
32912901AMPK regulation of Raptor and TSC2 mediate metformin effects on transcriptional control of anabolism and inflammation.Genes Dev2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
33157015Zmat3 Is a Key Splicing Regulator in the p53 Tumor Suppression Program.Mol Cell2020
34109316An in vivo genome-wide CRISPR screen identifies the RNA-binding protein Staufen2 as a key regulator of myeloid leukemia.Nat Cancer2020
33157015Zmat3 Is a Key Splicing Regulator in the p53 Tumor Suppression Program.Mol Cell2020
32912901AMPK regulation of Raptor and TSC2 mediate metformin effects on transcriptional control of anabolism and inflammation.Genes Dev2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
32252787Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.Genome Biol2020
30559470Widespread RNA editing dysregulation in brains from autistic individuals.Nat Neurosci2019
30559470Widespread RNA editing dysregulation in brains from autistic individuals.Nat Neurosci2019
30413564RBP-Maps enables robust generation of splicing regulatory maps.RNA2019
30652130Regulation of RNA editing by RNA-binding proteins in human cells.Commun Biol2019
30902979Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA.Nat Commun2019
31363146A protein-RNA interaction atlas of the ribosome biogenesis factor AATF.Sci Rep2019
31363146A protein-RNA interaction atlas of the ribosome biogenesis factor AATF.Sci Rep2019
30902979Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA.Nat Commun2019
30652130Regulation of RNA editing by RNA-binding proteins in human cells.Commun Biol2019
30413564RBP-Maps enables robust generation of splicing regulatory maps.RNA2019
28853213Advances and challenges in the detection of transcriptome-wide protein-RNA interactions.Wiley Interdiscip Rev RNA2018
28853213Advances and challenges in the detection of transcriptome-wide protein-RNA interactions.Wiley Interdiscip Rev RNA2018
29883606Sequence, Structure, and Context Preferences of Human RNA Binding Proteins.Mol Cell2018
29883606Sequence, Structure, and Context Preferences of Human RNA Binding Proteins.Mol Cell2018
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Collaborators

Gene W Yeo
University of California
Co-authored papers 36
Steven M Blue
University of California San Diego
Co-authored papers 11
Christopher B Burge
Co-authored papers 10
Brenton R Graveley
Co-authored papers 10
Peter Freese
Co-authored papers 7
Xintao Wei
Co-authored papers 7
Joel Rozowsky
Co-authored papers 5
Eric Lécuyer
Co-authored papers 5
Mark Gerstein
Yale University
Co-authored papers 4
Xinshu Xiao
University of California los angeles
Co-authored papers 4
Emily C Wheeler
University of California
Co-authored papers 4
Xiang-Dong Fu
Co-authored papers 3
Stefan Aigner
University of California San Diego
Co-authored papers 3
Michael Snyder
Stanford University
Co-authored papers 3
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University of California, USA Institute for Genomic Medicine
Co-authored papers 3
William Stafford Noble
Co-authored papers 3
Roger P Alexander
Co-authored papers 3
Jessika Adrian
Co-authored papers 2
Anshul Kundaje
Stanford University.
Co-authored papers 2
Trupti Kawli
Co-authored papers 2
Henry E Pratt
Co-authored papers 2
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
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Carrie A Davis
Stanford University
Co-authored papers 2
David U Gorkin
Center for Epigenomics, University of California San Diego
Co-authored papers 2
Jing Zhang
Co-authored papers 2
Michael J Purcaro
Co-authored papers 2
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 2
Ross C Hardison
Co-authored papers 2
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 2
Diane E Dickel
Co-authored papers 2
Release 1.2