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Author Details

David van Dijk
Yale School of Medicine, Yale University
2010
44
24
Richard Andrew Taylor (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36586415Nasal host response-based screening for undiagnosed respiratory viruses: a pathogen surveillance and detection study.Lancet Microbe2023
37748514Distinguishing features of long COVID identified through immune profiling.Nature2023
35108221Prdm6 controls heart development by regulating neural crest cell differentiation and migration.JCI Insight2022
35640610Interspecies commensal interactions have nonlinear impacts on host immunity.Cell Host Microbe2022
35320704Single-cell multiomics reveals persistence of HIV-1 in expanded cytotoxic T cell clones.Immunity2022
35064122Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19.Nat Commun2022
33147444Genome-wide CRISPR Screens Reveal Host Factors Critical for SARS-CoV-2 Infection.Cell2021
33881513A phenomapping-derived tool to personalize the selection of anatomical vs. functional testing in evaluating chest pain (ASSIST).Eur Heart J2021
33730024Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes.PLoS Biol2021
33891889Immune dysregulation and autoreactivity correlate with disease severity in SARS-CoV-2-associated multisystem inflammatory syndrome in children.Immunity2021
33635335A neutrophil activation signature predicts critical illness and mortality in COVID-19.Blood Adv2021
34040048A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization.Sci Rep2021
34286302Generating hard-to-obtain information from easy-to-obtain information: Applications in drug discovery and clinical inference.Patterns (N Y)2021
33433624Neuroinvasion of SARS-CoV-2 in human and mouse brain.J Exp Med2021
33300011Post-infectious inflammatory disease in MIS-C features elevated cytotoxicity signatures and autoreactivity that correlates with severity.medRxiv2021
32358012Novel Toxin-Antitoxin Module SlvT-SlvA Regulates Megaplasmid Stability and Incites Solvent Tolerance in Pseudomonas putida S12.Appl Environ Microbiol2020
34557339LEARNING GENERAL TRANSFORMATIONS OF DATA FOR OUT-OF-SAMPLE EXTENSIONS.IEEE Int Workshop Mach Learn Signal Process2020
34131660Interpretable Neuron Structuring with Graph Spectral Regularization.Adv Intell Data Anal2020
34337419TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics.Proc Mach Learn Res2020
31932777Uncovering axes of variation among single-cell cancer specimens.Nat Methods2020
31896828Author Correction: Visualizing structure and transitions in high-dimensional biological data.Nat Biotechnol2020
31738366Neurohormonal Blockade and Clinical Outcomes in Patients With Heart Failure Supported by Left Ventricular Assist Devices.JAMA Cardiol2020
33282193Circulating markers of angiogenesis and endotheliopathy in COVID-19.Pulm Circ2020
32838371Patient factors associated with SARS-CoV-2 in an admitted emergency department population.J Am Coll Emerg Physicians Open2020
32637968Circulating Markers of Angiogenesis and Endotheliopathy in COVID-19.medRxiv2020
32935108Neuroinvasion of SARS-CoV-2 in human and mouse brain.bioRxiv2020
32869025Genome-wide CRISPR screen reveals host genes that regulate SARS-CoV-2 infection.bioRxiv2020
32948672Transcriptomic and clonal characterization of T cells in the human central nervous system.Sci Immunol2020
32150565Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures.PLoS Negl Trop Dis2020
31591579Exploring single-cell data with deep multitasking neural networks.Nat Methods2019
31796933Visualizing structure and transitions in high-dimensional biological data.Nat Biotechnol2019
32747879Coarse Graining of Data via Inhomogeneous Diffusion Condensation.Proc IEEE Int Conf Big Data2019
29961576Recovering Gene Interactions from Single-Cell Data Using Data Diffusion.Cell2018
27965290Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators.Genome Res2017
28250019Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators.Genome Res2017
27182555PD-1 marks dysfunctional regulatory T cells in malignant gliomas.JCI Insight2016
26268986Slow-growing cells within isogenic populations have increased RNA polymerase error rates and DNA damage.Nat Commun2015
26355006Noise in gene expression is coupled to growth rate.Genome Res2015
24892909Publication metrics and success on the academic job market.Curr Biol2014
25030889Probing the effect of promoters on noise in gene expression using thousands of designed sequences.Genome Res2014
23565060Promoter sequence determines the relationship between expression level and noise.PLoS Biol2013
23403035Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise.Genome Res2013
20633292Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks.BMC Syst Biol2010
20967291Inference of surface membrane factors of HIV-1 infection through functional interaction networks.PLoS One2010
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Collaborators

Neal G Ravindra
Yale University School
Co-authored papers 11
Charles S Dela Cruz
Department of Microbial Pathogenesis Yale University New Haven
Co-authored papers 7
Eran Segal
Weizmann Institute of Science
Co-authored papers 6
Jason Bishai
Yale University
Co-authored papers 6
Craig B Wilen
Yale School of Medicine
Co-authored papers 5
David A Hafler
Yale School of Medicine, Yale School of Public Health
Co-authored papers 5
Akiko Iwasaki
Yale University
Co-authored papers 5
Aaron M Ring
Yale University School of Medicine
Co-authored papers 4
Alfred I Lee
Yale University School of Medicine
Co-authored papers 3
Stephanie Halene
Smilow Cancer Center, Yale University School of Medicine
Co-authored papers 3
Hiromitsu Asashima
Institute of Medicine, University of Tsukuba
Co-authored papers 3
Christopher Castaldi
Yale Center for Genome Analysis, Yale School of Medicine
Co-authored papers 3
Peter M A Sloot
Institute for Advanced Study, University of Amsterdam.
Co-authored papers 3
Murat Gunel
Yale School of Medicine
Co-authored papers 3
Peiwen Lu
Yale University School of Medicine
Co-authored papers 3
Francis P Wilson
Clinical and Translational Research Accelerator, Yale University School of Medicine
Co-authored papers 3
Richard W Pierce
Yale School of Medicine
Co-authored papers 3
Jennifer M Kwan
Yale School of Medicine
Co-authored papers 3
Eric Song
Yale University
Co-authored papers 3
Shelli F Farhadian
Yale School of Medicine
Co-authored papers 3
Hyung J Chun
Yale Cardiovascular Research Center, Yale University School of Medicine
Co-authored papers 3
Nathan D Grubaugh
Yale School of Public Health
Co-authored papers 2
Patrick Wong
Yale School of Medicine
Co-authored papers 2
Shrikant Mane
Yale School of Medicine
Co-authored papers 2
Wade Schulz (CM4AI)
Yale University
Co-authored papers 2
Albert I Ko
Instituto Goncalo Moniz, Yale School of Public Health
Co-authored papers 2
John G Doench
Co-authored papers 2
Kaya Bilguvar
Acibadem Mehmet Ali Aydinlar University
Co-authored papers 2
Chantal B F Vogels
Yale School of Public Health
Co-authored papers 2
Benhur Lee
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Release 1.2