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Author Details

John Harry Caufield
American Heart Association, American Society for Microbiology, International Society for Computational Biology, Lawrence Berkeley National Laboratory, University of California Los Angeles, University of Delaware, Virginia Commonwealth University
0000-0001-5705-7831
2012
24
12
PMIDPaper TitleJournal TitlePublished Year
38000386The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species.Nucleic Acids Res2024
38000386The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species.Nucleic Acids Res2024
37953324The Human Phenotype Ontology in 2024: phenotypes around the world.Nucleic Acids Res2024
37953324The Human Phenotype Ontology in 2024: phenotypes around the world.Nucleic Acids Res2024
37389415KG-Hub-building and exchanging biological knowledge graphs.Bioinformatics2023
37902366A Knowledge Graph Approach to Elucidate the Role of Organellar Pathways in Disease via Biomedical Reports.J Vis Exp2023
37389415KG-Hub-building and exchanging biological knowledge graphs.Bioinformatics2023
37902366A Knowledge Graph Approach to Elucidate the Role of Organellar Pathways in Disease via Biomedical Reports.J Vis Exp2023
33751044Cardiovascular informatics: building a bridge to data harmony.Cardiovasc Res2022
33751044Cardiovascular informatics: building a bridge to data harmony.Cardiovasc Res2022
33895137ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis.J Biol Chem2021
33895137ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis.J Biol Chem2021
33719446A Second Look at FAIR in Proteomic Investigations.J Proteome Res2021
33719446A Second Look at FAIR in Proteomic Investigations.J Proteome Res2021
33523203New advances in extracting and learning from protein-protein interactions within unstructured biomedical text data.Emerg Top Life Sci2019
33523203New advances in extracting and learning from protein-protein interactions within unstructured biomedical text data.Emerg Top Life Sci2019
29176613Global landscape of cell envelope protein complexes in Escherichia coli.Nat Biotechnol2018
30457569A reference set of curated biomedical data and metadata from clinical case reports.Sci Data2018
30295669A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts.J Vis Exp2018
29855948Making the Right Choice: Critical Parameters of the Y2H Systems.Methods Mol Biol2018
29176613Global landscape of cell envelope protein complexes in Escherichia coli.Nat Biotechnol2018
29414760Proteome Data Improves Protein Function Prediction in the Interactome of <i>Helicobacter pylori</i>.Mol Cell Proteomics2018
29775406Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease.Am J Physiol Heart Circ Physiol2018
29855948Making the Right Choice: Critical Parameters of the Y2H Systems.Methods Mol Biol2018
30295669A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts.J Vis Exp2018
30457569A reference set of curated biomedical data and metadata from clinical case reports.Sci Data2018
29414760Proteome Data Improves Protein Function Prediction in the Interactome of <i>Helicobacter pylori</i>.Mol Cell Proteomics2018
29775406Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease.Am J Physiol Heart Circ Physiol2018
29184079Virus-host protein-protein interactions of mycobacteriophage Giles.Sci Rep2017
29184079Virus-host protein-protein interactions of mycobacteriophage Giles.Sci Rep2017
28298180Bacterial protein meta-interactomes predict cross-species interactions and protein function.BMC Bioinformatics2017
28137570A Comparison of Two-Hybrid Approaches for Detecting Protein-Protein Interactions.Methods Enzymol2017
28137570A Comparison of Two-Hybrid Approaches for Detecting Protein-Protein Interactions.Methods Enzymol2017
28298180Bacterial protein meta-interactomes predict cross-species interactions and protein function.BMC Bioinformatics2017
25388641Specific N-terminal cleavage of ribosomal protein L27 in Staphylococcus aureus and related bacteria.Mol Microbiol2015
25388641Specific N-terminal cleavage of ribosomal protein L27 in Staphylococcus aureus and related bacteria.Mol Microbiol2015
25723151Protein complexes in bacteria.PLoS Comput Biol2015
25934943The yeast two-hybrid system: a tool for mapping protein-protein interactions.Cold Spring Harb Protoc2015
25934935Mapping protein-protein interactions using yeast two-hybrid assays.Cold Spring Harb Protoc2015
25986902The Protein Interactome of Mycobacteriophage Giles Predicts Functions for Unknown Proteins.J Bacteriol2015
25986902The Protein Interactome of Mycobacteriophage Giles Predicts Functions for Unknown Proteins.J Bacteriol2015
25934943The yeast two-hybrid system: a tool for mapping protein-protein interactions.Cold Spring Harb Protoc2015
25934935Mapping protein-protein interactions using yeast two-hybrid assays.Cold Spring Harb Protoc2015
25723151Protein complexes in bacteria.PLoS Comput Biol2015
22841565Studying protein complexes by the yeast two-hybrid system.Methods2012
23231818A comparison and optimization of yeast two-hybrid systems.Methods2012
23231818A comparison and optimization of yeast two-hybrid systems.Methods2012
22841565Studying protein complexes by the yeast two-hybrid system.Methods2012
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Collaborators

Peter Uetz
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 13
Jitender Mehla
University of Oklahoma
Co-authored papers 8
Peipei Ping
University of California at Los Angeles
Co-authored papers 6
Neha Sakhawalkar
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 4
Wei Wang
Co-authored papers 4
Wei Wang
IBM Thomas J Watson Research Center, University of California Los Angeles, University of North Carolina at Chapel Hill
Co-authored papers 4
Monica C Munoz-Torres
University of Colorado Anschutz Medical Campus
Co-authored papers 3
Christopher J Mungall
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 3
David A Liem
University of California davis
Co-authored papers 3
Stefan Wuchty
University of Miami
Co-authored papers 3
Dibakar Sigdel
university of california los angeles School of Medicine.
Co-authored papers 3
Nomi L Harris
Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
Co-authored papers 3
Seth Carbon
Lawrence Berkeley National Laboratory
Co-authored papers 3
Melissa A Haendel
American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
Co-authored papers 3
Kevin Schaper
University of Colorado Anschutz Medical Campus
Co-authored papers 2
Bryan Laraway
University of Colorado Anschutz Medical Campus
Co-authored papers 2
Alex A T Bui
Co-authored papers 2
Sanjana Murali
David Geffen School of Medicine, University of California los angeles
Co-authored papers 2
Nicole Vasilevsky
Critical Path Institute
Co-authored papers 2
Yijiang Zhou
The First Affiliated Hospital, Zhejiang University
Co-authored papers 2
Graham F Hatfull
University of Pittsburgh
Co-authored papers 2
Kent Shefchek
University of Colorado Anschutz Medical Campus
Co-authored papers 2
Julius O B Jacobsen
William Harvey Research Institute, Queen Mary University of London
Co-authored papers 2
Rebekah M Dedrick
University of Pittsburgh
Co-authored papers 2
Alla Gagarinova
University of Regina
Co-authored papers 2
Ding Wang
The Affiliated Hospital of Southwest Medical University
Co-authored papers 2
Allison A Johnson
Center for Biological Data Science, Virginia Commonwealth University
Co-authored papers 2
Seesandra V Rajagopala
Vanderbilt University Medical Center
Co-authored papers 2
Howard Choi
Institute of Integrative Biology, University of Liverpool
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