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Author Details

Brian J Parker
New York University.
2007
23
16
PMIDPaper TitleJournal TitlePublished Year
36999047CRMnet: A deep learning model for predicting gene expression from large regulatory sequence datasets.Front Big Data2023
34251362Identification of Alternative Splicing and Polyadenylation in RNA-seq Data.J Vis Exp2021
28062751Transcriptome-Wide Mapping of RNA 5-Methylcytosine in Arabidopsis mRNAs and Noncoding RNAs.Plant Cell2017
28349460Statistical Methods for Transcriptome-Wide Analysis of RNA Methylation by Bisulfite Sequencing.Methods Mol Biol2017
28234895A new link between transcriptional initiation and pre-mRNA splicing: The RNA binding histone variant H2A.B.PLoS Genet2017
27032571Role of miRNAs and alternative mRNA 3'-end cleavage and polyadenylation of their mRNA targets in cardiomyocyte hypertrophy.Biochim Biophys Acta2016
26861627Transcriptome dynamics of the microRNA inhibition response.Nucleic Acids Res2016
26089393Transcriptome dynamics of the microRNA inhibition response.Nucleic Acids Res2015
24299735Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome.Genome Res2014
23718963Molecular pathways involved in the improvement of non-alcoholic fatty liver disease.J Mol Endocrinol2013
23636946Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality.Genome Res2013
23802567MiR-492 impairs the angiogenic potential of endothelial cells.J Cell Mol Med2013
22344696Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA.Nucleic Acids Res2012
23085713Histone H2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics.Nat Struct Mol Biol2012
21389147MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action.RNA2011
21994248Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.Genome Res2011
22047616Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data.BMC Genomics2011
21994249New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes.Genome Res2011
21993624A high-resolution map of human evolutionary constraint using 29 mammals.Nature2011
21887249Systematic clustering of transcription start site landscapes.PLoS One2011
19208133Predicting microRNA targets in time-series microarray experiments via functional data analysis.BMC Bioinformatics2009
17764577Stratification bias in low signal microarray studies.BMC Bioinformatics2007
18391239In Silico identification and characterization of mRNA-like noncoding transcripts in Medicago truncatula.In Silico Biol2007
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Release 1.2