Author details

Full Name

Sam John

Affiliation

National Cancer Institute

ORCID

Career Start Year

1990

Papers

H Index

Expertise

CM4AI Collaborator

Nathan Sheffield (CM4AI)

PMID	Paper Title	Journal Title	Published Year
32840769	END-seq: An Unbiased, High-Resolution, and Genome-Wide Approach to Map DNA Double-Strand Breaks and Resection in Human Cells.	Methods Mol Biol	2021
32840769	END-seq: An Unbiased, High-Resolution, and Genome-Wide Approach to Map DNA Double-Strand Breaks and Resection in Human Cells.	Methods Mol Biol	2021
32057297	Suppressing proteasome mediated processing of topoisomerase II DNA-protein complexes preserves genome integrity.	Elife	2020
32057297	Suppressing proteasome mediated processing of topoisomerase II DNA-protein complexes preserves genome integrity.	Elife	2020
28784182	Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters.	Epigenetics Chromatin	2017
28784182	Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters.	Epigenetics Chromatin	2017
27443740	Replication fork stability confers chemoresistance in BRCA-deficient cells.	Nature	2016
27443740	Replication fork stability confers chemoresistance in BRCA-deficient cells.	Nature	2016
27680696	Erratum: Replication fork stability confers chemoresistance in BRCA-deficient cells.	Nature	2016
27680696	Erratum: Replication fork stability confers chemoresistance in BRCA-deficient cells.	Nature	2016
25689118	New Face for Chromatin-Related Mesenchymal Modulator: n-CHD9 Localizes to Nucleoli and Interacts With Ribosomal Genes.	J Cell Physiol	2015
25689118	New Face for Chromatin-Related Mesenchymal Modulator: n-CHD9 Localizes to Nucleoli and Interacts With Ribosomal Genes.	J Cell Physiol	2015
25677181	Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing.	Genome Res	2015
26257180	Role of DNA Methylation in Modulating Transcription Factor Occupancy.	Cell Rep	2015
26257180	Role of DNA Methylation in Modulating Transcription Factor Occupancy.	Cell Rep	2015
25677181	Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing.	Genome Res	2015
24196351	Minireview: Conversing with chromatin: the language of nuclear receptors.	Mol Endocrinol	2014
25486465	Tumor promoting role of the DNA damage response.	Cell Cycle	2014
24317492	Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions.	Nat Struct Mol Biol	2014
24196351	Minireview: Conversing with chromatin: the language of nuclear receptors.	Mol Endocrinol	2014
24185839	Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH.	Nat Methods	2014
25486465	Tumor promoting role of the DNA damage response.	Cell Cycle	2014
24317492	Overlapping chromatin-remodeling systems collaborate genome wide at dynamic chromatin transitions.	Nat Struct Mol Biol	2014
24185839	Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH.	Nat Methods	2014
23805837	Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding.	BMC Genomics	2013
23821440	Genome-scale mapping of DNase I hypersensitivity.	Curr Protoc Mol Biol	2013
23805837	Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding.	BMC Genomics	2013
23803465	Reprogramming the chromatin landscape: interplay of the estrogen and glucocorticoid receptors at the genomic level.	Cancer Res	2013
23793028	DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.	Nat Genet	2013
23665916	C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements.	EMBO J	2013
23821440	Genome-scale mapping of DNase I hypersensitivity.	Curr Protoc Mol Biol	2013
23665916	C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements.	EMBO J	2013
23803465	Reprogramming the chromatin landscape: interplay of the estrogen and glucocorticoid receptors at the genomic level.	Cancer Res	2013
23793028	DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.	Nat Genet	2013
22407764	The tumour suppressor and chromatin-remodelling factor BRG1 antagonizes Myc activity and promotes cell differentiation in human cancer.	EMBO Mol Med	2012
22734930	Rapid genome-scale mapping of chromatin accessibility in tissue.	Epigenetics Chromatin	2012
22955618	An expansive human regulatory lexicon encoded in transcription factor footprints.	Nature	2012
22955617	The accessible chromatin landscape of the human genome.	Nature	2012
22407764	The tumour suppressor and chromatin-remodelling factor BRG1 antagonizes Myc activity and promotes cell differentiation in human cancer.	EMBO Mol Med	2012
23176727	Analysis of the peroxisome proliferator-activated receptor-Î²/Î´ (PPARÎ²/Î´) cistrome reveals novel co-regulatory role of ATF4.	BMC Genomics	2012
23176727	Analysis of the peroxisome proliferator-activated receptor-Î²/Î´ (PPARÎ²/Î´) cistrome reveals novel co-regulatory role of ATF4.	BMC Genomics	2012
22955618	An expansive human regulatory lexicon encoded in transcription factor footprints.	Nature	2012
22955617	The accessible chromatin landscape of the human genome.	Nature	2012
22734930	Rapid genome-scale mapping of chromatin accessibility in tissue.	Epigenetics Chromatin	2012
21258342	Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.	Nat Genet	2011
21258342	Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.	Nat Genet	2011
21471403	Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements.	Genome Res	2011
21427703	Extensive chromatin remodelling and establishment of transcription factor 'hotspots' during early adipogenesis.	EMBO J	2011
21726817	Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding.	Mol Cell	2011
21835447	Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism.	Cell	2011

1 - 50 of 134

Greg Donahue

Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania

Career Start Year 2010

Number of shared co-authors 0

Michael J Guertin

Center for Cell Analysis and Modeling, University of Connecticut

Career Start Year 2010

Number of shared co-authors 5

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 1

Paul G Giresi

Center for Personal Dynamic Regulomes

Career Start Year 2003

Number of shared co-authors 29

Jason Gertz

Huntsman Cancer Institute, University of Utah

Career Start Year 2003

Number of shared co-authors 15

Michael J Buck

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 2002

Number of shared co-authors 1

Carmelo Ferrai

Institute of Pathology, University Medical Center

Career Start Year 2002

Number of shared co-authors 0

Yoichiro Shibata

Center for Genomic and Computational Biology, Duke University.

Career Start Year 2000

Number of shared co-authors 12

Stefan Bekiranov

University of Virginia

Career Start Year 2000

Number of shared co-authors 2

Yin C Lin

Baylor Institute for Immunology Research

Career Start Year 2000

Number of shared co-authors 0

Sven Heinz

U.C. San Diego School of Medicine

Career Start Year 2000

Number of shared co-authors 0

Duncan T Odom

Cancer Research UK Cambridge Institute, University of Cambridge

Career Start Year 1999

Number of shared co-authors 9

Siavash K Kurdistani

David Geffen School of Medicine, University of California los angeles

Career Start Year 1998

Number of shared co-authors 1

Dylan J Taatjes

University of Colorado

Career Start Year 1996

Number of shared co-authors 1

Fran??ois Robert

Institut de recherches cliniques de Montreal

Career Start Year 1996

Number of shared co-authors 2

Brian D Strahl

University of North Carolina

Career Start Year 1996

Number of shared co-authors 5

Bing Ren

Center for Epigenomics, University of California San Diego

Career Start Year 1995

Number of shared co-authors 43

Colin Logie

Radboud Institute for Molecular Science, Radboud University

Career Start Year 1995

Number of shared co-authors 0

Bradley E Bernstein

Broad Institute of MIT and Harvard

Career Start Year 1994

Number of shared co-authors 17

Oliver J Rando

University of Massachusetts Chan Medical School

Career Start Year 1994

Number of shared co-authors 3

Ana Pombo

Polytechnic Institute of Leiria

Career Start Year 1994

Number of shared co-authors 0

Raffaella Santoro

University of Zurich

Career Start Year 1991

Number of shared co-authors 2

Bas van Steensel

Oncode Institute, Netherlands Cancer Institute

Career Start Year 1991

Number of shared co-authors 6

Michael P Kladde

University of Florida

Career Start Year 1986

Number of shared co-authors 0

Shelley L Berger

Penn Epigenetics Institute, Perelman School of Medicine

Career Start Year 1985

Number of shared co-authors 3

James T Kadonaga

University of California

Career Start Year 1983

Number of shared co-authors 1

Danny Reinberg

HHMI/NYU Langone School of Medicine

Career Start Year 1980

Number of shared co-authors 4

Peggy J Farnham

Keck School of Medicine of USC

Career Start Year 1978

Number of shared co-authors 25

Robert G Roeder

the Rockefeller University

Career Start Year 1969

Number of shared co-authors 1

Gary S Stein

University of Vermont

Career Start Year 1968

Number of shared co-authors 2

row(s) 1 - 30 of 30

Gordon L Hager

National Cancer Institute, National Institutes of Health

Co-authored papers 39

John A Stamatoyannopoulos

Altius Institute for Biomedical Sciences

Co-authored papers 15

Myong-Hee Sung

National Institute on Aging, National Institutes of Health

Co-authored papers 13

Thomas A Johnson

National Cancer Institute, National Institutes of Health

Co-authored papers 13

Simon C Biddie

Institute of Genetics and Molecular Medicine, The University of Edinburgh

Co-authored papers 10

Songjoon Baek

Center for Cancer Research, National Cancer Institute

Co-authored papers 9

Ty C Voss

National Center for Advancing Translational Sciences, National Institutes of Health

Co-authored papers 8

Peter J Sabo

University of Washington

Co-authored papers 8

Robert E Thurman

University of Washington

Co-authored papers 7

Hao Wang

Altius Institute for Biomedical Sciences

Co-authored papers 6

Gilberto Fragoso

NCI Center for Bioinformatics, National Cancer Institute

Co-authored papers 5

Theresa K Canfield

University of Washington

Co-authored papers 4

Richard Sandstrom

Altius Institute for Biomedical Sciences

Co-authored papers 4

Kristen Lee

Altius Institute for Biomedical Sciences

Co-authored papers 4

Jeff Vierstra

Altius Institute for Biomedical Sciences

Co-authored papers 4

Rhea T Utley

Laval University Cancer Research Center

Co-authored papers 4

Molly Weaver

University of Kentucky

Co-authored papers 3

Emery H Bresnick

Co-authored papers 3

Alex P Reynolds

Altius Institute for Biomedical Sciences

Co-authored papers 3

Shane Neph

Altius Institute for Biomedical Sciences

Co-authored papers 3

Andrew B Stergachis

University of Washington School of Medicine

Co-authored papers 3

Shinny Vong

University of Washington

Co-authored papers 3

Jacques C??t??

Centre Hospitalier Universitaire (CHU) de Quebec-Universite Laval Research Center

Co-authored papers 3

Stafford L Lightman

Bristol Medical School, University of Bristol

Co-authored papers 3

Matthew T Maurano

Institute for Systems Genetics, NYU School of Medicine

Co-authored papers 3

Jos Jonkers

Oncode Institute, Netherlands Cancer Institute

Co-authored papers 2

Douglas Dunn

Altius Institute for Biomedical Sciences

Co-authored papers 2

Daniel Bates

Altius Institute for Biomedical Sciences

Co-authored papers 2

Audra K Johnson

Altius Institute for Biomedical Sciences

Co-authored papers 2

Eric Rynes

Altius Institute for Biomedical Sciences

Co-authored papers 2

1 - 30

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