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Author Details

Anthony J Cesnik
University of Wisconsin-Madison
2015
28
14
Leah V Schaffer (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35084980The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells.Science2022
35931766Author Correction: Spatiotemporal dissection of the cell cycle with single-cell proteogenomics.Nature2022
35290070Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.J Proteome Res2022
35073098MetaNetwork Enhances Biological Insights from Quantitative Proteomics Differences by Combining Clustering and Enrichment Analyses.J Proteome Res2022
32967423Spritz: A Proteogenomic Database Engine.J Proteome Res2021
33627808Spatiotemporal dissection of the cell cycle with single-cell proteogenomics.Nature2021
33436349Illuminating Non-genetic Cellular Heterogeneity with Imaging-Based Spatial Proteomics.Trends Cancer2021
32760039Author Correction: Analysis of the Human Protein Atlas Image Classification competition.Nat Methods2020
31969731Publisher Correction: Analysis of the Human Protein Atlas Image Classification competition.Nat Methods2020
32058723Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line.J Proteome Res2020
31822866Publisher Correction: Analysis of the Human Protein Atlas Image Classification competition.Nat Methods2020
32744794Mapping the nucleolar proteome reveals a spatiotemporal organization related to intrinsic protein disorder.Mol Syst Biol2020
31296583Comprehensive in vivo identification of the c-Myc mRNA protein interactome using HyPR-MS.RNA2019
31780840Analysis of the Human Protein Atlas Image Classification competition.Nat Methods2019
29195273Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families.J Proteome Res2018
29972301HyPR-MS for Multiplexed Discovery of MALAT1, NEAT1, and NORAD lncRNA Protein Interactomes.J Proteome Res2018
30180576Identification and Quantification of Murine Mitochondrial Proteoforms Using an Integrated Top-Down and Intact-Mass Strategy.J Proteome Res2018
29723810Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers.Transl Oncol2018
29397739ProForma: A Standard Proteoform Notation.J Proteome Res2018
29227670Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families.Anal Chem2018
28608680Correction to "Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements".J Proteome Res2017
29132314Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys.BMC Genomics2017
28968100Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database.J Proteome Res2017
27049631Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation.Annu Rev Anal Chem (Palo Alto Calif)2016
26704769Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy.J Proteome Res2016
26941048Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements.J Proteome Res2016
27184763HyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae.Genomics2016
26293515Electrochemical Synthesis of Binary and Ternary Niobium-Containing Oxide Electrodes Using the p-Benzoquinone/Hydroquinone Redox Couple.Langmuir2015
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Collaborators

Lloyd M Smith
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 16
Michael R Shortreed
University of Wisconsin-Madison
Co-authored papers 16
Mark Scalf
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 10
Brian L Frey
University of Wisconsin-Madison, 1101 University Ave
Co-authored papers 10
Emma Lundberg (CM4AI)
Stanford University
Co-authored papers 9
Devin P Sullivan
KTH - Royal Institute of Technology
Co-authored papers 6
Constantin Kappel
Co-authored papers 4
Casper F Winsnes
KTH - Royal Institute of Technology
Co-authored papers 4
Martin Hjelmare
KTH-Royal Institute of Technology
Co-authored papers 4
Stefan K Solntsev
University of Wisconsin-Madison
Co-authored papers 4
Leah V Schaffer (CM4AI)
University of California San Diego
Co-authored papers 4
Rachel A Knoener
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 4
Lovisa ??kesson
KTH-Royal Institute of Technology
Co-authored papers 4
Christian Gnann
KTH-Royal Institute of Technology
Co-authored papers 4
Mathias Uhl??n
KTH Royal Institute of Technology
Co-authored papers 3
Manuel D Leonetti
University of California, USA Howard Hughes Medical Institute san francisco
Co-authored papers 3
Diana Mahdessian
KTH - Royal Institute of Technology
Co-authored papers 3
Richard D LeDuc
Northwestern University
Co-authored papers 3
Neil L Kelleher
Northwestern University
Co-authored papers 3
Peter J Thul
KTH - Royal Institute of Technology
Co-authored papers 3
Yunxiang Dai
University of Wisconsin-Madison
Co-authored papers 2
Audrey P Gasch
University of Wisconsin-Madison
Co-authored papers 2
Fredric Johansson
KTH - Royal Institute of Technology
Co-authored papers 2
Cheng Zhang
KTH-Royal Institute of Technology
Co-authored papers 2
Michael Olivier
Co-authored papers 2
Rutger Schutten
KTH - Royal Institute of Technology
Co-authored papers 2
Oana Carja
Carnegie Mellon University
Co-authored papers 2
Muhammad Arif
KTH Royal Institute of Technology
Co-authored papers 2
Anna B??ckstr??m
KTH - Royal Institute of Technology
Co-authored papers 2
Ulrika Axelsson
KTH - Royal Institute of Technology
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