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Author Details

Frederic D Bushman
Perelman School of Medicine, University of Pennsylvania
1983
407
114
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37125442The HIV-1 Capsid-Targeted Inhibitor GSK878 Alters Selection of Target Sites for HIV DNA Integration.AIDS Res Hum Retroviruses2024
375485282-Hydroxyisovalerate Is Produced During Bacterial Vaginosis and Boosts HIV Infection in Resting T Cells.AIDS Res Hum Retroviruses2024
36459997Widespread, human-associated redondoviruses infect the commensal protozoan Entamoeba gingivalis.Cell Host Microbe2023
37478401Outcomes of hematopoietic stem cell gene therapy for Wiskott-Aldrich syndrome.Blood2023
37698927Proviral location affects cognate peptide-induced virus production and immune recognition of HIV-1-infected T cell clones.J Clin Invest2023
37816004Tracking gut microbiome and bloodstream infection in critically ill adults.PLoS One2023
37217829Effects of Mask Reuse on the Oropharyngeal, Skin, and Mask Microbiome.J Infect Dis2023
37011008Type I Interferon Signaling via the EGR2 Transcriptional Regulator Potentiates CAR T Cell-Intrinsic Dysfunction.Cancer Discov2023
37467494Chemotherapy-induced reversal of ciltacabtagene autoleucel-associated movement and neurocognitive toxicity.Blood2023
37196066Sexual dimorphism in the response to chronic circadian misalignment on a high-fat diet.Sci Transl Med2023
36754054DNA transposon mechanisms and pathways of genotoxicity.Mol Ther2023
36697862Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies.Nature2023
36624315Autologous T cell therapy for MAGE-A4<sup>+</sup> solid cancers in HLA-A*02<sup>+</sup> patients: a phase 1 trial.Nat Med2023
36745870Novel extragenic genomic safe harbors for precise therapeutic T-cell engineering.Blood2023
36867659Structure of a HIV-1 IN-Allosteric inhibitor complex at 2.93 ÿ resolution: Routes to inhibitor optimization.PLoS Pathog2023
34985985Collaboration between Clinical and Academic Laboratories for Sequencing SARS-CoV-2 Genomes.J Clin Microbiol2022
35550667The pediatric virome in health and disease.Cell Host Microbe2022
35582905Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1.J Clin Microbiol2022
35547854Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1.medRxiv2022
36477542Author Correction: Decade-long leukaemia remissions with persistence of CD4<sup>+</sup> CAR T cells.Nature2022
36533601Metagenomic sequencing of the bronchoalveolar lavage extracellular virome and cellular transcriptome of sarcoidosis patients does not detect rubella virus.Sarcoidosis Vasc Diffuse Lung Dis2022
36043873Correction for Merenstein et al., "Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome".mBio2022
36000731Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania.mBio2022
35870315The enigmatic roles of Anelloviridae and Redondoviridae in humans.Curr Opin Virol2022
36103583The Lung Allograft Microbiome Associates with Pepsin, Inflammation, and Primary Graft Dysfunction.Am J Respir Crit Care Med2022
36195943Alterations in the respiratory tract microbiome in COVID-19: current observations and potential significance.Microbiome2022
36385534Enterococci enhance Clostridioides difficile pathogenesis.Nature2022
35132417Detection and Interspecies Comparison of SARS-CoV-2 Delta Variant (AY.3) in Feces from a Domestic Cat and Human Samples.bioRxiv2022
35190680Rapid manufacturing of non-activated potent CAR T cells.Nat Biomed Eng2022
34980909Lentiviral globin gene therapy with reduced-intensity conditioning in adults with β-thalassemia: a phase 1 trial.Nat Med2022
35216014SARS-CoV-2 Delta Variant (AY.3) in the Feces of a Domestic Cat.Viruses2022
34969255A Summary of the Sixth International Workshop on Microbiome in HIV Pathogenesis, Prevention, and Treatment.AIDS Res Hum Retroviruses2022
35110735Decade-long leukaemia remissions with persistence of CD4<sup>+</sup> CAR T cells.Nature2022
33258767ICTV Virus Taxonomy Profile: <i>Redondoviridae</i>.J Gen Virol2021
33907751Comparative Analysis of Emerging B.1.1.7+E484K SARS-CoV-2 isolates from Pennsylvania.bioRxiv2021
33851179Signatures of COVID-19 severity and immune response in the respiratory tract microbiome.medRxiv2021
33791710Femtomolar SARS-CoV-2 Antigen Detection Using the Microbubbling Digital Assay with Smartphone Readout Enables Antigen Burden Quantitation and Dynamics Tracking.medRxiv2021
33515514Lentiviral vector ALS20 yields high hemoglobin levels with low genomic integrations for treatment of beta-globinopathies.Mol Ther2021
33786436Decreased Intestinal Microbiome Diversity in Pediatric Sepsis: A Conceptual Framework for Intestinal Dysbiosis to Influence Immunometabolic Function.Crit Care Explor2021
33785903The human virome: assembly, composition and host interactions.Nat Rev Microbiol2021
33619116NPM-ALK-Induced Reprogramming of Mature TCR-Stimulated T Cells Results in Dedifferentiation and Malignant Transformation.Cancer Res2021
33813257Assembly of the virome in newborn human infants.Curr Opin Virol2021
35130727SARS-CoV-2 Variants Associated with Vaccine Breakthrough in the Delaware Valley through Summer 2021.mBio2021
35027867Molecular Beacons Allow Specific RT-LAMP Detection of B.1.1.7 Variant SARS-CoV-2.J Biomol Tech2021
34383886Femtomolar SARS-CoV-2 Antigen Detection Using the Microbubbling Digital Assay with Smartphone Readout Enables Antigen Burden Quantitation and Tracking.Clin Chem2021
34822779Over-celling fetal microbial exposure.Cell2021
34763180The gut virome in inflammatory bowel diseases.Curr Opin Virol2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34704098SARS-CoV-2 variants associated with vaccine breakthrough in the Delaware Valley through summer 2021.medRxiv2021
34406857Redondovirus Diversity and Evolution on Global, Individual, and Molecular Scales.J Virol2021
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Collaborators

Children's Hospital of Philadelphia
Co-authored papers 56
University of Pennsylvania School of Medicine
Co-authored papers 56
University of Pennsylvania Perelman School of Medicine
Co-authored papers 44
Food Research Center (FoRC)
Co-authored papers 25
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 20
University of Pennsylvania Department of Pathology & Laboratory Medicine
Co-authored papers 13
University of California
Co-authored papers 13
Cornell University
Co-authored papers 9
The Salk Institute for Biological Studies
Co-authored papers 8
University of Minnesota
Co-authored papers 7
Co-authored papers 7
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 7
University of Pennsylvania Perelman School of Medicine
Co-authored papers 7
The Scripps Research Institute
Co-authored papers 7
Roche Pharma
Co-authored papers 7
Icahn School of Medicine at Mount Sinai
Co-authored papers 6
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 6
University of California
Co-authored papers 6
Merck & Co. Inc.
Co-authored papers 6
KU Leuven - University of Leuven
Co-authored papers 5
Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center
Co-authored papers 5
Johns Hopkins University School of Medicine
Co-authored papers 5
University of California san francisco
Co-authored papers 5
Broad Institute of MIT and Harvard
Co-authored papers 5
The Genome Center at Washington University, Washington University School of Medicine
Co-authored papers 5
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 5
Hospital Germans Trias i Pujol
Co-authored papers 5
Paul-Ehrlich-Institut
Co-authored papers 5
Co-authored papers 4
IF School of Medicine, University of Pennsylvania
Co-authored papers 4