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Author Details

Shintaro Katayama
Folkhalsan Research Center
2003
91
34
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37715654Effects of exercise on whole-blood transcriptome profile in children with overweight/obesity.Am J Hum Biol2024
37715654Effects of exercise on whole-blood transcriptome profile in children with overweight/obesity.Am J Hum Biol2024
36153824The Continued Absence of Functional Germline Stem Cells in Adult Ovaries.Stem Cells2023
36153824The Continued Absence of Functional Germline Stem Cells in Adult Ovaries.Stem Cells2023
36195485ATMP-classified, scalable, autologous cell spray for the treatment of skin wounds and assessment of its effects on wound healing clinically and on a molecular level.Burns2023
36717582B1 SINE-binding ZFP266 impedes mouse iPSC generation through suppression of chromatin opening mediated by reprogramming factors.Nat Commun2023
36876139Comprehensive characterization of the embryonic factor LEUTX.iScience2023
37314922Optimized single-cell RNA sequencing protocol to study early genome activation in mammalian preimplantation development.STAR Protoc2023
36472571In Reply: Revisiting Claims of the Continued Absence of Functional Germline Stem Cells in Adult Ovaries.Stem Cells2023
36853658Computational approach to evaluate scRNA-seq data quality and gene body coverage with SkewC.STAR Protoc2023
37224571Long-chain polyphosphates inhibit type I interferon signaling and augment LPS-induced cytokine secretion in human leukocytes.J Leukoc Biol2023
37314922Optimized single-cell RNA sequencing protocol to study early genome activation in mammalian preimplantation development.STAR Protoc2023
37224571Long-chain polyphosphates inhibit type I interferon signaling and augment LPS-induced cytokine secretion in human leukocytes.J Leukoc Biol2023
36853658Computational approach to evaluate scRNA-seq data quality and gene body coverage with SkewC.STAR Protoc2023
36717582B1 SINE-binding ZFP266 impedes mouse iPSC generation through suppression of chromatin opening mediated by reprogramming factors.Nat Commun2023
36472571In Reply: Revisiting Claims of the Continued Absence of Functional Germline Stem Cells in Adult Ovaries.Stem Cells2023
36876139Comprehensive characterization of the embryonic factor LEUTX.iScience2023
36195485ATMP-classified, scalable, autologous cell spray for the treatment of skin wounds and assessment of its effects on wound healing clinically and on a molecular level.Burns2023
35063129CRISPR activation enables high-fidelity reprogramming into human pluripotent stem cells.Stem Cell Reports2022
36339249Human endometrial cell-type-specific RNA sequencing provides new insights into the embryo-endometrium interplay.Hum Reprod Open2022
35419920Viral infection-related gene upregulation in monocytes in children with signs of β-cell autoimmunity.Pediatr Diabetes2022
35471239Human pluripotent stem cell-derived cells endogenously expressing follicle-stimulating hormone receptors: modeling the function of an inactivating receptor mutation.Mol Hum Reprod2022
35402882<i>DUX4</i> is a multifunctional factor priming human embryonic genome activation.iScience2022
35777358Transient DUX4 expression in human embryonic stem cells induces blastomere-like expression program that is marked by SLC34A2.Stem Cell Reports2022
35063129CRISPR activation enables high-fidelity reprogramming into human pluripotent stem cells.Stem Cell Reports2022
35146392SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data.iScience2022
35471239Human pluripotent stem cell-derived cells endogenously expressing follicle-stimulating hormone receptors: modeling the function of an inactivating receptor mutation.Mol Hum Reprod2022
35402882<i>DUX4</i> is a multifunctional factor priming human embryonic genome activation.iScience2022
35419920Viral infection-related gene upregulation in monocytes in children with signs of β-cell autoimmunity.Pediatr Diabetes2022
35777358Transient DUX4 expression in human embryonic stem cells induces blastomere-like expression program that is marked by SLC34A2.Stem Cell Reports2022
36339249Human endometrial cell-type-specific RNA sequencing provides new insights into the embryo-endometrium interplay.Hum Reprod Open2022
35146392SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data.iScience2022
33230195Distinct whole-blood transcriptome profile of children with metabolic healthy overweight/obesity compared to metabolic unhealthy overweight/obesity.Pediatr Res2021
31991411Motor Function Deficits in the Estrogen Receptor Beta Knockout Mouse: Role on Excitatory Neurotransmission and Myelination in the Motor Cortex.Neuroendocrinology2021
33898616Nasal upregulation of <i>CST1</i> in dog-sensitised children with severe allergic airway disease.ERJ Open Res2021
34102276Cystatin B-deficiency triggers ectopic histone H3 tail cleavage during neurogenesis.Neurobiol Dis2021
34205699Epitranscriptomics of Ischemic Heart Disease-The IHD-EPITRAN Study Design and Objectives.Int J Mol Sci2021
34131782Branched-chain amino acid metabolism is regulated by ERRα in primary human myotubes and is further impaired by glucose loading in type 2 diabetes.Diabetologia2021
33230195Distinct whole-blood transcriptome profile of children with metabolic healthy overweight/obesity compared to metabolic unhealthy overweight/obesity.Pediatr Res2021
34675070Embryonic LTR retrotransposons supply promoter modules to somatic tissues.Genome Res2021
34950881Generation of RNA sequencing libraries for transcriptome analysis of globin-rich tissues of the domestic dog.STAR Protoc2021
33898616Nasal upregulation of <i>CST1</i> in dog-sensitised children with severe allergic airway disease.ERJ Open Res2021
34950881Generation of RNA sequencing libraries for transcriptome analysis of globin-rich tissues of the domestic dog.STAR Protoc2021
34675070Embryonic LTR retrotransposons supply promoter modules to somatic tissues.Genome Res2021
34131782Branched-chain amino acid metabolism is regulated by ERRα in primary human myotubes and is further impaired by glucose loading in type 2 diabetes.Diabetologia2021
34102276Cystatin B-deficiency triggers ectopic histone H3 tail cleavage during neurogenesis.Neurobiol Dis2021
34205699Epitranscriptomics of Ischemic Heart Disease-The IHD-EPITRAN Study Design and Objectives.Int J Mol Sci2021
31991411Motor Function Deficits in the Estrogen Receptor Beta Knockout Mouse: Role on Excitatory Neurotransmission and Myelination in the Motor Cortex.Neuroendocrinology2021
31619476Acute wheeze-specific gene module shows correlation with vitamin D and asthma medication.Eur Respir J2020
32123174Single-cell analysis of human ovarian cortex identifies distinct cell populations but no oogonial stem cells.Nat Commun2020
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Collaborators

Juha Kere
Folkhalsan Research Center, University of Helsinki
Co-authored papers 60
Kaarel Krjutškov
Co-authored papers 32
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 26
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 20
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 15
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 14
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 12
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 11
Chikatoshi Kai
Co-authored papers 11
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 10
Mutsumi Kanamori-Katayama
Karolinska Institutet
Co-authored papers 10
Timothy Ravasi
Okinawa Institute of Science and Technology Graduate University
Co-authored papers 9
Shiro Fukuda
Graduate School of Medicine, Osaka University
Co-authored papers 9
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 8
Christine A Wells
The University of Melbourne
Co-authored papers 8
Albin Sandelin
University of Copenhagen
Co-authored papers 8
Sean M Grimmond
The University of Melbourne
Co-authored papers 7
Sten Linnarsson
Karolinska Institute
Co-authored papers 7
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 7
Martin C Frith
Artificial Intelligence Research Center, University of Tokyo
Co-authored papers 7
Noriko Ninomiya
Japan Tobacco Inc.
Co-authored papers 6
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 6
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Timo Otonkoski
Co-authored papers 6
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 6
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Pär G Engström
Co-authored papers 5
Alistair M Chalk
Co-authored papers 5
Geoffrey J Faulkner
Mater Research Institute - University of Queensland
Co-authored papers 5
Release 1.2