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Author Details

Sarala M Wimalaratne
European Bioinformatics Institute (EMBL-EBI)
2009
25
14
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36939006FAIR Island: real-world examples of place-based open science.Gigascience2023
36939006FAIR Island: real-world examples of place-based open science.Gigascience2023
33031499Identifiers.org: Compact Identifier services in the cloud.Bioinformatics2021
33031499Identifiers.org: Compact Identifier services in the cloud.Bioinformatics2021
29106614BioModels: expanding horizons to include more modelling approaches and formats.Nucleic Acids Res2018
29737976Uniform resolution of compact identifiers for biomedical data.Sci Data2018
29106614BioModels: expanding horizons to include more modelling approaches and formats.Nucleic Acids Res2018
29737976Uniform resolution of compact identifiers for biomedical data.Sci Data2018
28662064Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.PLoS Biol2017
28662064Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.PLoS Biol2017
27153608ProbOnto: ontology and knowledge base of probability distributions.Bioinformatics2016
27153608ProbOnto: ontology and knowledge base of probability distributions.Bioinformatics2016
27602295The health care and life sciences community profile for dataset descriptions.PeerJ2016
27602295The health care and life sciences community profile for dataset descriptions.PeerJ2016
25414348BioModels: ten-year anniversary.Nucleic Acids Res2015
25414348BioModels: ten-year anniversary.Nucleic Acids Res2015
25638809SPARQL-enabled identifier conversion with Identifiers.org.Bioinformatics2015
26225259Pharmacometrics Markup Language (PharmML): Opening New Perspectives for Model Exchange in Drug Development.CPT Pharmacometrics Syst Pharmacol2015
26225232BioModels: Content, Features, Functionality, and Use.CPT Pharmacometrics Syst Pharmacol2015
26225259Pharmacometrics Markup Language (PharmML): Opening New Perspectives for Model Exchange in Drug Development.CPT Pharmacometrics Syst Pharmacol2015
26225232BioModels: Content, Features, Functionality, and Use.CPT Pharmacometrics Syst Pharmacol2015
25638809SPARQL-enabled identifier conversion with Identifiers.org.Bioinformatics2015
24413672The EBI RDF platform: linked open data for the life sciences.Bioinformatics2014
24413672The EBI RDF platform: linked open data for the life sciences.Bioinformatics2014
25182954BioModels linked dataset.BMC Syst Biol2014
25182954BioModels linked dataset.BMC Syst Biol2014
22130590An infrastructure for ontology-based information systems in biomedicine: RICORDO case study.Bioinformatics2012
22130590An infrastructure for ontology-based information systems in biomedicine: RICORDO case study.Bioinformatics2012
21235804Revision history aware repositories of computational models of biological systems.BMC Bioinformatics2011
21343142A common layer of interoperability for biomedical ontologies based on OWL EL.Bioinformatics2011
21296753Model annotation for synthetic biology: automating model to nucleotide sequence conversion.Bioinformatics2011
21235804Revision history aware repositories of computational models of biological systems.BMC Bioinformatics2011
21878109The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions.BMC Res Notes2011
21835028Integrating systems biology models and biomedical ontologies.BMC Syst Biol2011
22027554Controlled vocabularies and semantics in systems biology.Mol Syst Biol2011
22027554Controlled vocabularies and semantics in systems biology.Mol Syst Biol2011
21835028Integrating systems biology models and biomedical ontologies.BMC Syst Biol2011
21878109The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions.BMC Res Notes2011
21296753Model annotation for synthetic biology: automating model to nucleotide sequence conversion.Bioinformatics2011
21343142A common layer of interoperability for biomedical ontologies based on OWL EL.Bioinformatics2011
19151076Facilitating modularity and reuse: guidelines for structuring CellML 1.1 models by isolating common biophysical concepts.Exp Physiol2009
19564239Biophysical annotation and representation of CellML models.Bioinformatics2009
19380315CellML metadata standards, associated tools and repositories.Philos Trans A Math Phys Eng Sci2009
19703920A method for visualizing CellML models.Bioinformatics2009
19668183The Systems Biology Graphical Notation.Nat Biotechnol2009
19703920A method for visualizing CellML models.Bioinformatics2009
19151076Facilitating modularity and reuse: guidelines for structuring CellML 1.1 models by isolating common biophysical concepts.Exp Physiol2009
19564239Biophysical annotation and representation of CellML models.Bioinformatics2009
19380315CellML metadata standards, associated tools and repositories.Philos Trans A Math Phys Eng Sci2009
19668183The Systems Biology Graphical Notation.Nat Biotechnol2009
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Collaborators

Babraham Institute
Co-authored papers 11
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 10
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 9
University of Manchester
Co-authored papers 8
Institute of Data Science, Maastricht University
Co-authored papers 6
Co-authored papers 5
King Abdullah University of Science and Technology
Co-authored papers 4
Institute of Cancer and Genomic Sciences, University of Birmingham
Co-authored papers 4
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Co-authored papers 3
Ontario Institute for Cancer Research
Co-authored papers 3
carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4
Co-authored papers 3
Co-authored papers 3
University of Colorado - Anschutz Medical Campus
Co-authored papers 2
Co-authored papers 2
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 2
Co-authored papers 2
University of California berkeley
Co-authored papers 2
European Bioinformatics Institute
Co-authored papers 2
Oxford e-Research Centre, University of Oxford
Co-authored papers 2
Co-authored papers 2
Institute for Implementation Science in Health Care, University of Zurich
Co-authored papers 2
Database Center for Life Science
Co-authored papers 2
university of california san diego
Co-authored papers 2
Stellenbosch University, Vrije Universiteit Amsterdam
Co-authored papers 2
Novo Nordisk Foundation Centre for Biosustainability, Technical University of Denmark
Co-authored papers 2
American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
Co-authored papers 2
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
University of Manchester
Co-authored papers 2