Author details

Full Name

Joshua F McMichael

Affiliation

Washington University

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37953380	DGIdb 5.0: rebuilding the drug-gene interaction database for precision medicine and drug discovery platforms.	Nucleic Acids Res	2024
37953380	DGIdb 5.0: rebuilding the drug-gene interaction database for precision medicine and drug discovery platforms.	Nucleic Acids Res	2024
36373660	CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.	Nucleic Acids Res	2023
36373660	CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.	Nucleic Acids Res	2023
37910143	Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma.	Cancer Res Commun	2023
37027480	Computational prediction of MHC anchor locations guides neoantigen identification and prioritization.	Sci Immunol	2023
36949070	Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer.	Nat Commun	2023
37910143	Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma.	Cancer Res Commun	2023
36949070	Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer.	Nat Commun	2023
37027480	Computational prediction of MHC anchor locations guides neoantigen identification and prioritization.	Sci Immunol	2023
35995947	Spatially restricted drivers and transitional cell populations cooperate with the microenvironment in untreated and chemo-resistant pancreatic cancer.	Nat Genet	2022
35444317	The Human Pangenome Project: a global resource to map genomic diversity.	Nature	2022
35624339	A community approach to the cancer-variant-interpretation bottleneck.	Nat Cancer	2022
35995947	Spatially restricted drivers and transitional cell populations cooperate with the microenvironment in untreated and chemo-resistant pancreatic cancer.	Nat Genet	2022
35444317	The Human Pangenome Project: a global resource to map genomic diversity.	Nature	2022
35624339	A community approach to the cancer-variant-interpretation bottleneck.	Nat Cancer	2022
33237278	Integration of the Drug-Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts.	Nucleic Acids Res	2021
33963182	Co-evolution of tumor and immune cells during progression of multiple myeloma.	Nat Commun	2021
33577785	Proteogenomic and metabolomic characterization of human glioblastoma.	Cancer Cell	2021
33237278	Integration of the Drug-Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts.	Nucleic Acids Res	2021
33577785	Proteogenomic and metabolomic characterization of human glioblastoma.	Cancer Cell	2021
33963182	Co-evolution of tumor and immune cells during progression of multiple myeloma.	Nat Commun	2021
31907209	pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens.	Cancer Immunol Res	2020
31907209	pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens.	Cancer Immunol Res	2020
31196969	Regulated Phosphosignaling Associated with Breast Cancer Subtypes and Druggability.	Mol Cell Proteomics	2019
31779674	Standard operating procedure for curation and clinical interpretation of variants in cancer.	Genome Med	2019
31196969	Regulated Phosphosignaling Associated with Breast Cancer Subtypes and Druggability.	Mol Cell Proteomics	2019
31779674	Standard operating procedure for curation and clinical interpretation of variants in cancer.	Genome Med	2019
29625052	Pathogenic Germline Variants in 10,389 Adult Cancers.	Cell	2018
30311370	Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards.	Hum Mutat	2018
30053901	Integrative omics analyses broaden treatment targets in human cancer.	Genome Med	2018
29625052	Pathogenic Germline Variants in 10,389 Adult Cancers.	Cell	2018
30053901	Integrative omics analyses broaden treatment targets in human cancer.	Genome Med	2018
30311370	Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards.	Hum Mutat	2018
28138153	CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.	Nat Genet	2017
28138153	CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.	Nat Genet	2017
27684579	DoCM: a database of curated mutations in cancer.	Nat Methods	2016
28389595	Cancer Immunogenomics: Computational Neoantigen Identification and Vaccine Design.	Cold Spring Harb Symp Quant Biol	2016
26657142	Systematic discovery of complex insertions and deletions in human cancers.	Nat Med	2016
26531824	DGIdb 2.0: mining clinically relevant drug-gene interactions.	Nucleic Acids Res	2016
27684579	DoCM: a database of curated mutations in cancer.	Nat Methods	2016
27821060	Visualizing tumor evolution with the fishplot package for R.	BMC Genomics	2016
28389595	Cancer Immunogenomics: Computational Neoantigen Identification and Vaccine Design.	Cold Spring Harb Symp Quant Biol	2016
26657142	Systematic discovery of complex insertions and deletions in human cancers.	Nat Med	2016
26531824	DGIdb 2.0: mining clinically relevant drug-gene interactions.	Nucleic Acids Res	2016
27821060	Visualizing tumor evolution with the fishplot package for R.	BMC Genomics	2016
26158448	Genome Modeling System: A Knowledge Management Platform for Genomics.	PLoS Comput Biol	2015
26645048	Optimizing cancer genome sequencing and analysis.	Cell Syst	2015
26158448	Genome Modeling System: A Knowledge Management Platform for Genomics.	PLoS Comput Biol	2015
26689913	Patterns and functional implications of rare germline variants across 12 cancer types.	Nat Commun	2015

1 - 50 of 82

Daniel H??bschmann

Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM)

Career Start Year 2016

Number of shared co-authors 7

Sebastian Uhrig

National Center for Tumor Diseases (NCT), German Cancer Research Center (DKFZ)

Career Start Year 2016

Number of shared co-authors 7

Daniel Vod??k

Institute for Cancer Research, Oslo University Hospital

Career Start Year 2014

Number of shared co-authors 4

Arshi Arora

Memorial Sloan Kettering Cancer Center

Career Start Year 2011

Number of shared co-authors 0

Gunes Gundem

Memorial Sloan Kettering Cancer Center

Career Start Year 2010

Number of shared co-authors 4

Eliezer M Van Allen

Dana-Farber Cancer Institute

Career Start Year 2009

Number of shared co-authors 39

Hannah Carter

University of California San Diego

Career Start Year 2008

Number of shared co-authors 12

Ignaty Leshchiner

Broad Institute of Massachusetts Institute of Technology and Harvard

Career Start Year 2008

Number of shared co-authors 5

Moritz Gerstung

German Cancer Research Centre DKFZ

Career Start Year 2007

Number of shared co-authors 0

Jeroen de Ridder

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2006

Number of shared co-authors 4

Nicola Waddell

QIMR Berghofer Medical Research Institute

Career Start Year 2006

Number of shared co-authors 7

Barry S Taylor

Memorial Sloan Kettering Cancer Center

Career Start Year 2006

Number of shared co-authors 37

David C Wedge

Manchester Cancer Research Centre, University of Manchester

Career Start Year 2006

Number of shared co-authors 7

Jamie K Teer

H. Lee Moffitt Cancer Center and Research Institute

Career Start Year 2005

Number of shared co-authors 5

Chip Stewart

Broad Institute of MIT and Harvard

Career Start Year 2004

Number of shared co-authors 48

Keiran Raine

Wellcome Sanger Institute

Career Start Year 2004

Number of shared co-authors 5

Matthias Schlesner

University of Augsburg

Career Start Year 2004

Number of shared co-authors 12

Sohrab P Shah

Memorial Sloan Kettering Cancer Center

Career Start Year 2003

Number of shared co-authors 14

Peter Van Loo

The Francis Crick Institute

Career Start Year 2003

Number of shared co-authors 9

Nikolaus Schultz

Memorial Sloan Kettering Cancer Center

Career Start Year 2003

Number of shared co-authors 63

Jianhua Zhang

University of Texas MD Anderson Cancer Center

Career Start Year 2003

Number of shared co-authors 35

Olivier Harismendy

University of California

Career Start Year 2003

Number of shared co-authors 0

Trevor J Pugh

Princess Margaret Cancer Centre, University Health Network

Career Start Year 2003

Number of shared co-authors 26

Olivier Elemento

Meyer Cancer Center

Career Start Year 2002

Number of shared co-authors 29

Jordi Deu-Pons

Institute for Research in Biomedicine

Career Start Year 2001

Number of shared co-authors 18

Vladimir Makarov

Center for Immunotherapy and Precision-Immuno-Oncology, Cleveland Clinic

Career Start Year 2001

Number of shared co-authors 5

Michael N Edmonson

St. Jude Children's Research Hospital

Career Start Year 1999

Number of shared co-authors 19

Rachel Karchin

Johns Hopkins University

Career Start Year 1998

Number of shared co-authors 30

Adam Butler

Wellcome Sanger Institute

Career Start Year 1996

Number of shared co-authors 12

John V Pearson

QIMR Berghofer Medical Research Institute

Career Start Year 1996

Number of shared co-authors 12

row(s) 1 - 30 of 30

Li Ding

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 24

Elaine R Mardis

The Ohio State University

Co-authored papers 21

Obi L Griffith

Washington University

Co-authored papers 20

Richard K Wilson

The Ohio State University

Co-authored papers 19

Malachi Griffith

Washington University

Co-authored papers 18

Christopher A Miller

Washington University School of Medicine

Co-authored papers 18

Michael C Wendl

Washington University in St Louis

Co-authored papers 17

Robert S Fulton

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 16

Timothy J Ley

Washington University School of Medicine

Co-authored papers 15

Michael D McLellan

McDonnell Genome Institute, Washington University in St. Louis

Co-authored papers 14

Jason Walker

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 13

David E Larson

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 13

Adam C Coffman

Washington University

Co-authored papers 12

Charles Lu

Co-authored papers 11

Daniel C Koboldt

Institute for Genomic Medicine, Nationwide Children's Hospital

Co-authored papers 10

Ken Chen

University of Texas MD Anderson Cancer Center

Co-authored papers 9

Lucinda Fulton

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 9

Alex H Wagner

Iowa State University, Mayo Clinic, Nationwide Children's Hospital, The Ohio State University College of Medicine, University of Iowa, Washington University in Saint Louis

Co-authored papers 9

Susanna Kiwala

Washington University

Co-authored papers 9

Cyriac Kandoth

University of California los angeles

Co-authored papers 9

John F DiPersio

Washington University School of Medicine

Co-authored papers 9

Feng Chen

Washington University in St Louis