Skip to Main Content

Author Details

Anil K Shukla
Pacific Northwest National Laboratory
1990
65
28
PMIDPaper TitleJournal TitlePublished Year
32929206Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber.ISME J2021
34472326Exposure to an Environmental Mixture of Polycyclic Aromatic Hydrocarbons Induces Hepatic Cytochrome P450 Enzymes in Mice.Chem Res Toxicol2021
31872761Structure Dependent Determination of Organophosphate Targets in Mammalian Tissues Using Activity-Based Protein Profiling.Chem Res Toxicol2020
30341719Preconditioning in the Rhesus Macaque Induces a Proteomic Signature Following Cerebral Ischemia that Is Associated with Neuroprotection.Transl Stroke Res2019
31426316Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium <i>Synechococcus elongatus</i> UTEX 2973.Biomolecules2019
31189691Phosphoproteome Analysis Reveals Estrogen-ER Pathway as a Modulator of mTOR Activity Via DEPTOR.Mol Cell Proteomics2019
30541282A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome.J Am Chem Soc2019
29797682Proteomic Analysis of Single Mammalian Cells Enabled by Microfluidic Nanodroplet Sample Preparation and Ultrasensitive NanoLC-MS.Angew Chem Int Ed Engl2018
29972024Multifunctional Activity-Based Protein Profiling of the Developing Lung.J Proteome Res2018
29941660Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets.Mol Cell Proteomics2018
29857311Fatiguing contractions increase protein S-glutathionylation occupancy in mouse skeletal muscle.Redox Biol2018
29899368Author Correction: Informed-Proteomics: open-source software package for top-down proteomics.Nat Methods2018
30194354Cell type-resolved human lung lipidome reveals cellular cooperation in lung function.Sci Rep2018
30553726Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways.Cell Syst2018
30271983Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells.Commun Biol2018
30269481Proteome Profiling of 1 to 5 Spiked Circulating Tumor Cells Isolated from Whole Blood Using Immunodensity Enrichment, Laser Capture Microdissection, Nanodroplet Sample Processing, and Ultrasensitive nanoLC-MS.Anal Chem2018
30542328Rare Earth Elements Alter Redox Balance in <i>Methylomicrobium alcaliphilum</i> 20Z<sup>R</sup>.Front Microbiol2018
29491378Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells.Nat Commun2018
29516783Time-resolved proteome profiling of normal lung development.Am J Physiol Lung Cell Mol Physiol2018
28077236High-resolution ultrahigh-pressure long column reversed-phase liquid chromatography for top-down proteomics.J Chromatogr A2017
28145528Lipidomics reveals dramatic lipid compositional changes in the maturing postnatal lung.Sci Rep2017
29184018Ancient Regulatory Role of Lysine Acetylation in Central Metabolism.mBio2017
29154144Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis.Cell Host Microbe2017
29164873Plasma Protein Turnover Rates in Rats Using Stable Isotope Labeling, Global Proteomics, and Activity-Based Protein Profiling.Anal Chem2017
29068682Activity-Based Probes for Isoenzyme- and Site-Specific Functional Characterization of Glutathione S-Transferases.J Am Chem Soc2017
28783154Informed-Proteomics: open-source software package for top-down proteomics.Nat Methods2017
28657654Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.J Pathol2017
27321845Dissociation of doubly charged clusters of lithium acetate: Asymmetric fission and breakdown of the liquid drop model.Rapid Commun Mass Spectrom2016
27822525MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses.mSystems2016
27670688Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry.Mol Cell Proteomics2016
27806300Role of CTGF in Sensitivity to Hyperthermia in Ovarian and Uterine Cancers.Cell Rep2016
28061542An efficient method for native protein purification in the selected range from prostate cancer tissue digests.Chin Clin Oncol2016
25681903Lithium formate ion clusters formation during electrospray ionization: Evidence of magic number clusters by mass spectrometry and ab initio calculations.J Chem Phys2015
26271001Diacyltransferase Activity and Chain Length Specificity of Mycobacterium tuberculosis PapA5 in the Synthesis of Alkyl β-Diol Lipids.Biochemistry2015
24846384Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses.mBio2014
25977790A comprehensive collection of systems biology data characterizing the host response to viral infection.Sci Data2014
25433089Bayesian proteoform modeling improves protein quantification of global proteomic measurements.Mol Cell Proteomics2014
25222651High sensitivity combined with extended structural coverage of labile compounds via nanoelectrospray ionization at subambient pressures.Anal Chem2014
25118826Polysialylated N-glycans identified in human serum through combined developments in sample preparation, separations, and electrospray ionization-mass spectrometry.Anal Chem2014
25145539Expediting SRM assay development for large-scale targeted proteomics experiments.J Proteome Res2014
25143833A method to determine lysine acetylation stoichiometries.Int J Proteomics2014
25129695Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements.Mol Cell Proteomics2014
24770561Molecular structure and stability of dissolved lithium polysulfide species.Phys Chem Chem Phys2014
23019139A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.Proteomics2013
24076077Impact of alg3 gene deletion on growth, development, pigment production, protein secretion, and functions of recombinant Trichoderma reesei cellobiohydrolases in Aspergillus niger.Fungal Genet Biol2013
23919993Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury.mBio2013
23935999A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses.PLoS One2013
23599423Disparate proteome responses of pathogenic and nonpathogenic aspergilli to human serum measured by activity-based protein profiling (ABPP).Mol Cell Proteomics2013
23555055Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans.Int J Proteomics2013
23204418Proteome analyses of strains ATCC 51142 and PCC 7822 of the diazotrophic cyanobacterium Cyanothece sp. under culture conditions resulting in enhanced Hâ¿¿ production.Appl Environ Microbiol2013
  • 1 - 50 of 65

Recommended Authors

University of Wisconsin-Madison
Career Start Year 2011
Number of shared co-authors 0
Utrecht Institute for Pharmaceutical Sciences, Utrecht University
Career Start Year 2008
Number of shared co-authors 0
Florida State University
Career Start Year 2008
Number of shared co-authors 2
Northwestern University
Career Start Year 2003
Number of shared co-authors 3
EPFL Innovation Park
Career Start Year 2001
Number of shared co-authors 1
University of Wisconsin-Madison, 1101 University Ave
Career Start Year 2000
Number of shared co-authors 0
Washington University
Career Start Year 1999
Number of shared co-authors 0
Institut Pasteur, Universite Paris Cite, CNRS UAR4
Career Start Year 1999
Number of shared co-authors 2
Center for Proteomics and Metabolomics, Leiden University Medical Center
Career Start Year 1999
Number of shared co-authors 2
Northeastern University
Career Start Year 1998
Number of shared co-authors 2
University of Toronto
Career Start Year 1997
Number of shared co-authors 0
University of Antwerp, University of Leeds
Career Start Year 1997
Number of shared co-authors 1
Georgia Institute of Technology
Career Start Year 1997
Number of shared co-authors 2
Institute of Chemistry, University of Campinas
Career Start Year 1995
Number of shared co-authors 0
University of Washington
Career Start Year 1995
Number of shared co-authors 10
McGill University
Career Start Year 1994
Number of shared co-authors 5
Florida State University
Career Start Year 1993
Number of shared co-authors 1
Scripps Center for Metabolomics and Mass Spectrometry, The Scripps Research Institute
Career Start Year 1993
Number of shared co-authors 0
The Ohio State University College of Medicine
Career Start Year 1992
Number of shared co-authors 8
university of california los angeles
Career Start Year 1991
Number of shared co-authors 1
Utrecht University
Career Start Year 1991
Number of shared co-authors 2
Institute of Microbiology of the CAS
Career Start Year 1991
Number of shared co-authors 0
University of Victoria
Career Start Year 1988
Number of shared co-authors 7
University of California los angeles
Career Start Year 1987
Number of shared co-authors 4
Center for Genomic and Computational Biology
Career Start Year 1985
Number of shared co-authors 1
The Rockefeller University
Career Start Year 1984
Number of shared co-authors 3
University of Georgia
Career Start Year 1979
Number of shared co-authors 0
Washington University in St. Louis
Career Start Year 1978
Number of shared co-authors 0
University of Maryland, College Park
Career Start Year 1966
Number of shared co-authors 2
Department of Pharmaceutical Chemistry, University of California san francisco
Career Start Year 1964
Number of shared co-authors 3

Collaborators

Pacific Northwest National Laboratory
Co-authored papers 36
Co-authored papers 16
Pacific Northwest National Laboratory
Co-authored papers 13
Co-authored papers 12
Pacific Northwest National Laboratory
Co-authored papers 11
Oregon Health and Science University
Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 9
Pacific Northwest National Laboratory
Co-authored papers 8
Co-authored papers 7
Brigham Young University
Co-authored papers 7
Pacific Northwest National Laboratory
Co-authored papers 7
Pacific Northwest National Laboratory
Co-authored papers 7
Pacific Northwest National Laboratory
Co-authored papers 7
University of Washington
Co-authored papers 6
Pacific Northwest National Laboratory
Co-authored papers 6
University of North Carolina
Co-authored papers 6
Pacific Northwest National Laboratory
Co-authored papers 6
Pacific Northwest National Laboratory
Co-authored papers 6
Co-authored papers 5
Pacific Northwest National Laboratory
Co-authored papers 5
The University of North Carolina at Chapel Hill
Co-authored papers 5
Pacific Northwest National Laboratory
Co-authored papers 5
Co-authored papers 5
Center for Innate Immunity and Immune Disease, University of Washington
Co-authored papers 5
Pacific Northwest National Laboratory
Co-authored papers 5