Author details

Full Name

Patrick Ruch

Affiliation

University of Applied Sciences and Arts of Western Switzerland (HES-SO).

ORCID

Career Start Year

1999

Papers

H Index

Expertise

CM4AI Collaborator

Timothy Clark (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36511598	COVoc and COVTriage: novel resources to support literature triage.	Bioinformatics	2023
37388252	Multilingual RECIST classification of radiology reports using supervised learning.	Front Digit Health	2023
37002680	Assessing the use of supplementary materials to improve genomic variant discovery.	Database (Oxford)	2023
35274687	Variomes: a high recall search engine to support the curation of genomic variants.	Bioinformatics	2022
35612233	Analyzing the Information Content of Text-Based Files in Supplementary Materials of Biomedical Literature.	Stud Health Technol Inform	2022
35612224	Classification of Oncology Treatment Responses from French Radiology Reports with Supervised Machine Learning.	Stud Health Technol Inform	2022
35612222	Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service.	Stud Health Technol Inform	2022
34870074	Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora.	Front Res Metr Anal	2021
32367111	UPCLASS: a deep learning-based classifier for UniProtKB entry publications.	Database (Oxford)	2020
31713636	DisProt: intrinsic protein disorder annotation in 2020.	Nucleic Acids Res	2020
32379317	SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts.	Nucleic Acids Res	2020
32570509	Text-Mining Services of the Swiss Variant Interpretation Platform for Oncology.	Stud Health Technol Inform	2020
32570397	Machine Learning for Automatic Encoding of French Electronic Medical Records: Is More Data Better?	Stud Health Technol Inform	2020
29883272	Suicide Notes: Their Utility in Understanding the Motivations Behind Suicide and Preventing Future Ones.	Arch Suicide Res	2019
31824649	An intrinsically disordered proteins community for ELIXIR.	F1000Res	2019
29293556	ORBDA: An openEHR benchmark dataset for performance assessment of electronic health record servers.	PLoS One	2018
30576492	Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt.	Database (Oxford)	2018
30329035	Overview of the BioCreative VI text-mining services for Kinome Curation Track.	Database (Oxford)	2018
27812936	Text Mining to Support Gene Ontology Curation and Vice Versa.	Methods Mol Biol	2017
28423780	Development and Evaluation of a Case-Based Retrieval Service.	Stud Health Technol Inform	2017
29220475	Improving average ranking precision in user searches for biomedical research datasets.	Database (Oxford)	2017
29220432	Triage by ranking to support the curation of protein interactions.	Database (Oxford)	2017
28948232	SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data.	Wellcome Open Res	2017
27374119	neXtA5: accelerating annotation of articles via automated approaches in neXtProt.	Database (Oxford)	2016
26384372	Deep Question Answering for protein annotation.	Database (Oxford)	2015
24564220	Development and tuning of an original search engine for patent libraries in medicinal chemistry.	BMC Bioinformatics	2014
25190367	Closing the loop: from paper to protein annotation using supervised Gene Ontology classification.	Database (Oxford)	2014
25160337	Electronic processing of informed consents in a global pharmaceutical company environment.	Stud Health Technol Inform	2014
25157073	Overview of the gene ontology task at BioCreative IV.	Database (Oxford)	2014
23517090	Application of text-mining for updating protein post-translational modification annotation in UniProtKB.	BMC Bioinformatics	2013
23842461	Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases.	Database (Oxford)	2013
23920842	Use of controlled vocabularies to improve biomedical information retrieval tasks.	Stud Health Technol Inform	2013
24013487	The COMBREX project: design, methodology, and initial results.	PLoS Biol	2013
23646153	Assisted knowledge discovery for the maintenance of clinical guidelines.	PLoS One	2013
23808970	Improving data and knowledge management to better integrate health care and research.	J Intern Med	2013
23542988	Utilization of ontology look-up services in information retrieval for biomedical literature.	Stud Health Technol Inform	2013
22642960	Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation.	J Med Internet Res	2012
23221176	Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database.	Database (Oxford)	2012
22890351	A medical informatics perspective on decision support systems. Findings from the yearbook 2012 section on decision support.	Yearb Med Inform	2012
22874182	Classification and prioritization of biomedical literature for the comparative toxicogenomics database.	Stud Health Technol Inform	2012
22874181	An advanced search engine for patent analytics in medicinal chemistry.	Stud Health Technol Inform	2012
22491124	A user-friendly tool for medical-related patent retrieval.	Stud Health Technol Inform	2012
22491118	Pathogens and gene product normalization in the biomedical literature.	Stud Health Technol Inform	2012
21938321	A medical informatics perspective on health informatics 3.0. Findings from the Yearbook 2011 section on health informatics 3.0.	Yearb Med Inform	2011
22151901	The gene normalization task in BioCreative III.	BMC Bioinformatics	2011
21893795	Using multimodal mining to drive clinical guidelines development.	Stud Health Technol Inform	2011
21893739	Interoperability driven integration of biomedical data sources.	Stud Health Technol Inform	2011
20938571	Findings from the yearbook 2010 section on decision support systems.	Yearb Med Inform	2010
19745235	DebugIT: building a European distributed clinical data mining network to foster the fight against microbial diseases.	Stud Health Technol Inform	2009
20351908	QA-driven guidelines generation for bacteriotherapy.	AMIA Annu Symp Proc	2009

1 - 50 of 95

Sam Henry

George Mason University

Career Start Year 2017

Number of shared co-authors 1

Yaoyun Zhang

The University of Texas School of Biomedical Informatics

Career Start Year 2015

Number of shared co-authors 0

Majid Rastegar-Mojarad

Mayo Clinic

Career Start Year 2013

Number of shared co-authors 1

Dingcheng Li

University of Minnesota

Career Start Year 2012

Number of shared co-authors 2

Alejandro Rodr??guez-Gonz??lez

Centro de Tecnologia Biomedica. Universidad Politecnica de Madrid

Career Start Year 2012

Number of shared co-authors 1

Kirk Roberts

Georgia Institute of Technology, National Library of Medicine, University of Texas Health Science Center at Houston, University of Texas at Dallas

Career Start Year 2011

Number of shared co-authors 2

Stephen Wu

The University of Texas Health Science Center at Houston

Career Start Year 2011

Number of shared co-authors 3

Siddhartha R Jonnalagadda

Department of Preventative Medicine Northwestern University Chicago IL.

Career Start Year 2010

Number of shared co-authors 3

Vianney Jouhet

Harvard Medical School

Career Start Year 2009

Number of shared co-authors 1

Bridget T McInnes

Virginia Commonwealth University

Career Start Year 2007

Number of shared co-authors 1

Matthias Samwald

Institute of Artificial Intelligence, Medical University of Vienna

Career Start Year 2007

Number of shared co-authors 2

Qiaozhu Mei

University of Michigan ann arbor

Career Start Year 2006

Number of shared co-authors 1

Dina Demner-Fushman

Lister Hill National Center for Biomedical Communications

Career Start Year 2004

Number of shared co-authors 7

St??phane M Meystre

OnePlanet Research Center and imec

Career Start Year 2003

Number of shared co-authors 1

Halil Kilicoglu

University of Illinois Urbana-Champaign

Career Start Year 2003

Number of shared co-authors 4

Guergana Savova

Boston Children's Hospital, Harvard Medical School.

Career Start Year 2003

Number of shared co-authors 4

Hua Xu

Yale University

Career Start Year 2003

Number of shared co-authors 4

Komandur Elayavilli Ravikumar

Mayo Clinic

Career Start Year 2003

Number of shared co-authors 6

Serguei Pakhomov

University of Minnesota

Career Start Year 2002

Number of shared co-authors 1

Javed Mostafa

University of North Carolina at Chapel Hill

Career Start Year 2001

Number of shared co-authors 1

Marcelo Fiszman

Pontifical Catholic University of Rio de Janeiro

Career Start Year 1998

Number of shared co-authors 1

Stefan Schulz

Institute for Medical Informatics, Medical University of Graz

Career Start Year 1997

Number of shared co-authors 8

Sonya E Shooshan

National Institutes of Health

Career Start Year 1997

Number of shared co-authors 2

Filip Ginter

University of Turku

Career Start Year 1996

Number of shared co-authors 17

Udo Hahn

Friedrich Schiller University Jena

Career Start Year 1995

Number of shared co-authors 14

Olivier Bodenreider

National Institutes of Health

Career Start Year 1993

Number of shared co-authors 8

Tapio Salakoski

University of Turku

Career Start Year 1992

Number of shared co-authors 17

Erik M van Mulligen

Erasmus University Medical Center

Career Start Year 1991

Number of shared co-authors 19

Carol Friedman

Columbia University

Career Start Year 1990

Number of shared co-authors 5

Christopher G Chute

Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota

Career Start Year 1985

Number of shared co-authors 9

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