Author details

Full Name

John W Whitaker

Affiliation

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34273350	Response to Marchetti etÂ al.	J Invest Dermatol	2022
31334813	Identification of DNA motifs that regulate DNA methylation.	Nucleic Acids Res	2019
30755522	Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse.	Proc Natl Acad Sci U S A	2019
29765031	Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes.	Nat Commun	2018
27537368	The Transcriptional Response to DNA-Double-Strand Breaks in Physcomitrella patens.	PLoS ONE	2016
27140173	Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations.	Genome Biol	2016
26960733	Constructing 3D interaction maps from 1D epigenomes.	Nat Commun	2016
27275015	Abnormal <i>PTPN11</i> enhancer methylation promotes rheumatoid arthritis fibroblast-like synoviocyte aggressiveness and joint inflammation.	JCI Insight	2016
27159840	LBH Gene Transcription Regulation by the Interplay of an Enhancer Risk Allele and DNA Methylation in Rheumatoid Arthritis.	Arthritis Rheumatol	2016
26605523	Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation.	Nature	2016
27849614	Epipolymorphisms associated with the clinical outcome of autoimmune arthritis affect CD4+ T cell activation pathways.	Proc Natl Acad Sci U S A	2016
25240437	Predicting the human epigenome from DNA motifs.	Nat Methods	2015
25461775	Computational schemes for the prediction and annotation of enhancers from epigenomic assays.	Methods	2015
25707478	The Rheumatoid Arthritis Risk Gene LBH Regulates Growth in Fibroblast-like Synoviocytes.	Arthritis Rheumatol	2015
25693563	Integrative analysis of 111 reference human epigenomes.	Nature	2015
25901943	Integrative omics analysis of rheumatoid arthritis identifies non-obvious therapeutic targets.	PLoS One	2015
25808728	DNA Methylome Signature in Synoviocytes From Patients With Early Rheumatoid Arthritis Compared to Synoviocytes From Patients With Longstanding Rheumatoid Arthritis.	Arthritis Rheumatol	2015
26030523	Human body epigenome maps reveal noncanonical DNA methylation variation.	Nature	2015
26288175	Correction: Integrative Omics Analysis of Rheumatoid Arthritis Identifies Non-Obvious Therapeutic Targets.	PLoS One	2015
23664764	Epigenomic analysis of multilineage differentiation of human embryonic stem cells.	Cell	2013
22736089	DNA methylome signature in rheumatoid arthritis.	Ann Rheum Dis	2013
24078702	STAR: an integrated solution to management and visualization of sequencing data.	Bioinformatics	2013
24038352	Predicting enhancer transcription and activity from chromatin modifications.	Nucleic Acids Res	2013
23631487	An imprinted rheumatoid arthritis methylome signature reflects pathogenic phenotype.	Genome Med	2013
22730289	Global identification of transcriptional regulators of pluripotency and differentiation in embryonic stem cells.	Nucleic Acids Res	2012
19598237	Mutagen structure and transcriptional response: induction of distinct transcriptional profiles in Salmonella TA100 by the drinking-water mutagen MX and its homologues.	Environ Mol Mutagen	2010
18953037	metaTIGER: a metabolic evolution resource.	Nucleic Acids Research	2009
19614596	Prediction of horizontal gene transfers in eukaryotes: approaches and challenges.	Biochemical Society Transactions	2009
19717343	Alio intuitu: the automated reconstruction of the metabolic networks of parasites.	Trends in Parasitology	2009
19368726	The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes.		2009