Author details

Full Name

Andrew D Yates

Affiliation

European Bioinformatics Institute

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

Timothy Clark (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37953337	Ensembl 2024.	Nucleic Acids Res	2024
36318249	Ensembl 2023.	Nucleic Acids Res	2023
36540993	Development and application of a computable genotype model in the GA4GH Variation Representation Specification.	Pac Symp Biocomput	2023
36420896	GENCODE: reference annotation for the human and mouse genomes in 2023.	Nucleic Acids Res	2023
34634797	The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.	Nucleic Acids Res	2022
36075919	From biomedical cloud platforms to microservices: next steps in FAIR data and analysis.	Sci Data	2022
34791415	Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.	Nucleic Acids Res	2022
34791404	Ensembl 2022.	Nucleic Acids Res	2022
34788826	PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions.	Nucleic Acids Res	2022
34816521	Annotating and prioritizing genomic variants using the Ensembl Variant Effect Predictor-A tutorial.	Hum Mutat	2022
33270111	GENCODE 2021.	Nucleic Acids Res	2021
35072136	GA4GH: International policies and standards for data sharing across genomic research and healthcare.	Cell Genom	2021
35311178	The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification.	Cell Genom	2021
34493866	A compendium of uniformly processed human gene expression and splicing quantitative trait loci.	Nat Genet	2021
34260694	Refget: standardized access to reference sequences.	Bioinformatics	2021
33137190	Ensembl 2021.	Nucleic Acids Res	2021
31691826	Ensembl 2020.	Nucleic Acids Res	2020
31733065	PHI-base: the pathogen-host interactions database.	Nucleic Acids Res	2020
30407521	Ensembl 2019.	Nucleic Acids Res	2019
31787936	Collaborative Annotation Redefines Gene Sets for Crucial Phytopathogens.	Front Microbiol	2019
31278684	Sharing Programming Resources Between Bio* Projects.	Methods Mol Biol	2019
30357393	GENCODE reference annotation for the human and mouse genomes.	Nucleic Acids Res	2019
29092050	Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.	Nucleic Acids Res	2018
30543619	Eleven quick tips to build a usable REST API for life sciences.	PLoS Comput Biol	2018
30311379	ClinGen advancing genomic data-sharing standards as a GA4GH driver project.	Hum Mutat	2018
29155950	Ensembl 2018.	Nucleic Acids Res	2018
27899575	Ensembl 2017.	Nucleic Acids Res	2017
28365736	Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation.	Database (Oxford)	2017
26896847	Ensembl comparative genomics resources.	Database (Oxford)	2016
27141089	Ensembl comparative genomics resources.	Database (Oxford)	2016
26687719	Ensembl 2016.	Nucleic Acids Res	2016
25352552	Ensembl 2015.	Nucleic Acids Res	2015
25236461	The Ensembl REST API: Ensembl Data for Any Language.	Bioinformatics	2015
24316576	Ensembl 2014.	Nucleic Acids Res	2014
23203987	Ensembl 2013.	Nucleic Acids Res	2013
22067447	Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species.	Nucleic Acids Res	2012
22877863	BioJava: an open-source framework for bioinformatics in 2012.	Bioinformatics	2012
22399473	Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies.	Methods Mol Biol	2012
22086963	Ensembl 2012.	Nucleic Acids Res	2012
19884133	Ensembl Genomes: extending Ensembl across the taxonomic space.	Nucleic Acids Res	2010
18689808	BioJava: an open-source framework for bioinformatics.	Bioinformatics	2008
17485433	AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes.	Bioinformatics	2007
17344846	Patterns of somatic mutation in human cancer genomes.	Nature	2007
16175573	Sequence analysis of the protein kinase gene family in human testicular germ-cell tumors of adolescents and adults.	Genes Chromosomes Cancer	2006
17088437	Mutation analysis of 24 known cancer genes in the NCI-60 cell line set.	Mol Cancer Ther	2006
17186471	Mutations in the gene encoding the Sigma 2 subunit of the adaptor protein 1 complex, AP1S2, cause X-linked mental retardation.	Am J Hum Genet	2006
16618716	A hypermutation phenotype and somatic MSH6 mutations in recurrent human malignant gliomas after alkylator chemotherapy.	Cancer Res	2006
15908952	A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer.	Nat Genet	2005
16140923	Somatic mutations of the protein kinase gene family in human lung cancer.	Cancer Res	2005
15457249	Lung cancer: intragenic ERBB2 kinase mutations in tumours.	Nature	2004

1 - 50 of 50

Tremayne Mushayahama

University of Southern California

Career Start Year 2019

Number of shared co-authors 9

Serghei Mangul

School of Pharmacy, University of Southern California

Career Start Year 2011

Number of shared co-authors 4

Jeremy Goecks

Oregon Health & Science University

Career Start Year 2010

Number of shared co-authors 13

Chase Miller

University of Utah

Career Start Year 2010

Number of shared co-authors 6

Salvador Capella-Gutierrez

Spanish National Bioinformatics Institute (INB/ELIXIR-ES)

Career Start Year 2009

Number of shared co-authors 25

Morris A Swertz

University of Groningen, University Medical Center Groningen

Career Start Year 2004

Number of shared co-authors 52

James Taylor

Johns Hopkins University

Career Start Year 2004

Number of shared co-authors 29

Andrew R Jackson

Baylor College of Medicine

Career Start Year 2004

Number of shared co-authors 19

Justin Paschall

National Human Genome Research Institute, National Institutes of Health

Career Start Year 2004

Number of shared co-authors 26

Michael C Schatz

Johns Hopkins University

Career Start Year 2004

Number of shared co-authors 21

Joshua Orvis

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2004

Number of shared co-authors 3

Yana Bromberg

Rutgers University

Career Start Year 2003

Number of shared co-authors 0

Lachlan J M Coin

The Peter Doherty Institute for Infection and Immunity, The University of Melbourne

Career Start Year 2003

Number of shared co-authors 14

Brad A Chapman

Harvard T.H. Chan School of Public Health

Career Start Year 2003

Number of shared co-authors 12

Timo Lassmann

Telethon Kids Institute, University of Western Australia

Career Start Year 2002

Number of shared co-authors 10

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 3

Tyler Alioto

Universitat de Barcelona (UB)

Career Start Year 2001

Number of shared co-authors 26

Anton Nekrutenko

The Pennsylvania State University, University Park

Career Start Year 1998

Number of shared co-authors 12

Michele Clamp

Harvard University

Career Start Year 1998

Number of shared co-authors 30

Jonathan Crabtree

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1998

Number of shared co-authors 3

Elizabeth A Worthey

Heersink School of Medicine, The University of Alabama at Birmingham

Career Start Year 1995

Number of shared co-authors 9

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 50

Mark Yandell

University of Utah

Career Start Year 1994

Number of shared co-authors 21

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 26

Benjamin C Hitz

Stanford University School of Medicine

Career Start Year 1992

Number of shared co-authors 12

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Career Start Year 1990

Number of shared co-authors 44

Kim D Pruitt

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1989

Number of shared co-authors 18

Gustavo Glusman

Institute for Systems Biology

Career Start Year 1988

Number of shared co-authors 22

Vincent Ferretti

Ontario Institute for Cancer Research

Career Start Year 1986

Number of shared co-authors 17

Justin T Reese

Lawrence Berkeley National Laboratory

Career Start Year 1985

Number of shared co-authors 11

row(s) 1 - 30 of 30

Paul Flicek

European Bioinformatics Institute

Co-authored papers 23

Fiona Cunningham

European Bioinformatics Institute

Co-authored papers 17

Sarah E Hunt

European Bioinformatics Institute

Co-authored papers 15

Daniel R Zerbino

European Bioinformatics Institute

Co-authored papers 14

Adam Frankish

Co-authored papers 11

Helen Schuilenburg

European Bioinformatics Institute

Co-authored papers 9

Ewan Birney

European Bioinformatics Institute

Co-authored papers 9

Andrew Menzies

Wellcome Sanger Institute

Co-authored papers 9

Rebecca Shepherd

Murdoch Children's Research Institute, Royal Children's Hospital

Co-authored papers 9

Phillip A Futreal

The University of Texas MD Anderson Cancer Center

Co-authored papers 9

Jon Teague

Wellcome Sanger Institute

Co-authored papers 9

Adam Butler

Wellcome Sanger Institute

Co-authored papers 9

Keiran Raine

Wellcome Sanger Institute

Co-authored papers 9

Sarah Edkins

Co-authored papers 9

Sarah O'Meara

Clinical Research Facility, Mercy University Hospital

Co-authored papers 8

Michael R Stratton

Wellcome Sanger Institute

Co-authored papers 8

Sara Widaa

Co-authored papers 8

Jonathan Hinton

Inivata Ltd

Co-authored papers 7

Christopher Hunter

BGI Hong Kong Tech Co Ltd.

Co-authored papers 7

Gemma Buck

Co-authored papers 7

Stephen M J Searle

Wellcome Trust Sanger Institute

Co-authored papers 7

Daniel M Staines

European Bioinformatics Institute

Co-authored papers 7

Chris Greenman

University of East Anglia

Co-authored papers 7

Rishi Nag

European Bioinformatics Institute

Co-authored papers 7

David Jones

Wellcome Sanger Institute

Co-authored papers 7

John Tate

Co-authored papers 6

Tim Hubbard

Co-authored papers 6

Daniel Barrell

Oncology R&D

Co-authored papers 6

Matthew R Laird

European Bioinformatics Institute

Co-authored papers 5

Douglas F Easton

University of Cambridge

Co-authored papers 5

1 - 30

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