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| 37474911 | Long-read, chromosome-scale assembly of Vitis rotundifolia cv. Carlos and its unique resistance to Xylella fastidiosa subsp. fastidiosa. | BMC Genomics | 2023 |
| 37708394 | A haplotype-resolved chromosome-scale genome for Quercus rubra L. provides insights into the genetics of adaptive traits for red oak species. | G3 (Bethesda) | 2023 |
| 37352235 | Chemical profile and analysis of biosynthetic pathways and genes of volatile terpenes in Pityopsis ruthii, a rare and endangered flowering plant. | PLoS One | 2023 |
| 34748273 | A high-quality reference genome for Fraxinus pennsylvanica for ash species restoration and research. | Mol Ecol Resour | 2022 |
| 35765178 | Characterization and microsatellite marker development for a common bark and ambrosia beetle associate, Geosmithia obscura. | Microbiologyopen | 2022 |
| 35421080 | Ten simple rules to ruin a collaborative environment. | PLoS Comput Biol | 2022 |
| 35524105 | Chloroplast genome of the invasive Pyrus calleryana underscores the high molecular diversity of the species. | J Appl Genet | 2022 |
| 35684218 | Development and Characterization of 20 Genomic SSR Markers for Ornamental Cultivars of <i>Weigela</i>. | Plants (Basel) | 2022 |
| 36445691 | Identification of Novel Viruses and Their Microbial Hosts from Soils with Long-Term Nitrogen Fertilization and Cover Cropping Management. | mSystems | 2022 |
| 33968979 | Genome-Wide Changes of Regulatory Non-Coding RNAs Reveal Pollen Development Initiated at Ecodormancy in Peach. | Front Mol Biosci | 2021 |
| 33621238 | Response of bitter and sweet Chenopodium quinoa varieties to cucumber mosaic virus: Transcriptome and small RNASeq perspective. | PLoS One | 2021 |
| 33807587 | Development and Characterization of 15 Novel Genomic SSRs for <i>Viburnum farreri</i>. | Plants (Basel) | 2021 |
| 34719668 | High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii). | Hortic Res | 2021 |
| 34251419 | Tripal, a community update after 10Â years of supporting open source, standards-based genetic, genomic and breeding databases. | Brief Bioinform | 2021 |
| 32210938 | The "Neglected Viruses" of <i>Taihu</i>: Abundant Transcripts for Viruses Infecting Eukaryotes and Their Potential Role in Phytoplankton Succession. | Front Microbiol | 2020 |
| 32059640 | Transcriptome profiles of Quercus rubra responding to increased O<sub>3</sub> stress. | BMC Genomics | 2020 |
| 31960040 | Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata. | Database (Oxford) | 2020 |
| 33370297 | Complete chloroplast genome comparisons for Pityopsis (Asteraceae). | PLoS One | 2020 |
| 32788980 | Species diversity and phylogeography of <i>Cornus kousa</i> (Asian dogwood) captured by genomic and genic microsatellites. | Ecol Evol | 2020 |
| 32180783 | Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach. | Front Plant Sci | 2020 |
| 30357347 | 15 years of GDR: New data and functionality in the Genome Database for Rosaceae. | Nucleic Acids Res | 2019 |
| 30192000 | The essential chloroplast ribosomal protein uL15c interacts with the chloroplast RNA helicase ISE2 and affects intercellular trafficking through plasmodesmata. | New Phytol | 2019 |
| 31328773 | Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. | Database (Oxford) | 2019 |
| 31293610 | Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment. | Front Plant Sci | 2019 |
| 31477026 | Soil indigenous microbiome and plant genotypes cooperatively modify soybean rhizosphere microbiome assembly. | BMC Microbiol | 2019 |
| 31070767 | Association of the phenylpropanoid pathway with dormancy and adaptive trait variation in apricot (Prunus armeniaca). | Tree Physiol | 2019 |
| 30865259 | Growing and cultivating the forest genomics database, TreeGenes. | Database (Oxford) | 2019 |
| 30864941 | Development of Genomic Resources for the Powdery Mildew, <i>Erysiphe pulchra</i>. | Plant Dis | 2019 |
| 30760810 | Taraxacum kok-saghyz (rubber dandelion) genomic microsatellite loci reveal modest genetic diversity and cross-amplify broadly to related species. | Sci Rep | 2019 |
| 30418578 | Comprehensive evaluation of RNA-seq analysis pipelines in diploid and polyploid species. | Gigascience | 2018 |
| 29862454 | Genome-wide association study identifies loci associated with milk leukocyte phenotypes following experimental challenge with Streptococcus uberis. | Immunogenetics | 2018 |
| 30239679 | AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. | Database (Oxford) | 2018 |
| 30239664 | Growing and cultivating the forest genomics database, TreeGenes. | Database (Oxford) | 2018 |
| 30050545 | Population Structure and Genetic Diversity Within the Endangered Species <i>Pityopsis ruthii</i> (Asteraceae). | Front Plant Sci | 2018 |
| 30156527 | A novel picornavirus-like genome from transcriptome sequencing of sugar beet cyst nematode represents a new putative genus. | J Gen Virol | 2018 |
| 30352068 | Haplotyping of Cornus florida and C. kousa chloroplasts: Insights into species-level differences and patterns of plastic DNA variation in cultivars. | PLoS One | 2018 |
| 30295719 | Tripal Developer Toolkit. | Database (Oxford) | 2018 |
| 27997049 | Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding. | Mol Ecol | 2017 |
| 28346704 | The chloroplast RNA helicase ISE2 is required for multiple chloroplast RNA processing steps in Arabidopsis thaliana. | Plant J | 2017 |
| 29220446 | New extension software modules to enhance searching and display of transcriptome data in Tripal databases. | Database (Oxford) | 2017 |
| 28784085 | Regulation of gene expression in roots of the pH-sensitive Vaccinium corymbosum and the pH-tolerant Vaccinium arboreum in response to near neutral pH stress using RNA-Seq. | BMC Genomics | 2017 |
| 28558688 | High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra. | BMC Genomics | 2017 |
| 28827983 | Genotypic and phenotypic evaluation of off-type grasses in hybrid Bermudagrass [<i>Cynodon dactylon</i> (L.) Pers. x <i>C. transvaalensis</i> Burtt-Davy] putting greens using genotyping-by-sequencing and morphological characterization. | Hereditas | 2017 |
| 28789702 | Development of novel genic microsatellite markers from transcriptome sequencing in sugar maple (Acer saccharum Marsh.). | BMC Res Notes | 2017 |
| 27245738 | Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. | BMC Biotechnol | 2016 |
| 27589953 | The green ash transcriptome and identification of genes responding to abiotic and biotic stresses. | BMC Genomics | 2016 |
| 26099268 | The Methylome of Soybean Roots during the Compatible Interaction with the Soybean Cyst Nematode. | Plant Physiol | 2015 |
| 26438416 | Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes. | BMC Genomics | 2015 |
| 26499487 | Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.). | BMC Plant Biol | 2015 |
| 26698853 | Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing. | PLoS One | 2015 |