Author details

Full Name

Nives ??kunca

Affiliation

ETH Zurich, Universitatstrasse 19

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
27812933	Primer on the Gene Ontology.	Methods Mol Biol	2017
27812945	Visualizing GO Annotations.	Methods Mol Biol	2017
27812938	Evaluating Computational Gene Ontology Annotations.	Methods Mol Biol	2017
27604469	An expanded evaluation of protein function prediction methods shows an improvement in accuracy.	Genome Biol	2016
25399418	The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.	Nucleic Acids Res	2015
25866392	A transcriptomic-phylogenomic analysis of the evolutionary relationships of flatworms.	Curr Biol	2015
26020646	Inferring horizontal gene transfer.	PLoS Comput Biol	2015
25957950	The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.	Database (Oxford)	2015
25679783	Phylogenetic profiling: how much input data is enough?	PLoS One	2015
25402615	The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease.	Nat Biotechnol	2014
23353650	A large-scale evaluation of computational protein function prediction.	Nat Methods	2013
24138813	CAFA and the open world of protein function predictions.	Trends Genet	2013
23308060	Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships.	PLoS Comput Biol	2013
22693439	Quality of computationally inferred gene ontology annotations.	PLoS Comput Biol	2012
21330331	The what, where, how and why of gene ontology--a primer for bioinformaticians.	Brief Bioinform	2011
21789182	REVIGO summarizes and visualizes long lists of gene ontology terms.	PLoS One	2011
20585573	Translational selection is ubiquitous in prokaryotes.	PLoS Genet	2010
17660200	Polyketide synthase genes and the natural products potential of Dictyostelium discoideum.	Bioinformatics	2007

1 - 18 of 18

Alex Warwick Vesztrocy

University of Lausanne

Career Start Year 2017

Number of shared co-authors 71

David Anderson de Lima Morais

Universite de Sherbrooke

Career Start Year 2010

Number of shared co-authors 3

Salvador Capella-Gutierrez

Spanish National Bioinformatics Institute (INB/ELIXIR-ES)

Career Start Year 2009

Number of shared co-authors 15

Gergely Csaba

Ludwig-Maximilians-Universitat Munchen

Career Start Year 2007

Number of shared co-authors 0

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 1

Joshua Orvis

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2004

Number of shared co-authors 5

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 0

Ying Xu

The China-Japan Union Hospital, Jilin University

Career Start Year 2002

Number of shared co-authors 0

Paramvir S Dehal

Lawrence Berkeley National Laboratory

Career Start Year 2001

Number of shared co-authors 3

Kim Rutherford

University of Cambridge

Career Start Year 2000

Number of shared co-authors 20

Nicola Mulder

University of Cape Town

Career Start Year 1999

Number of shared co-authors 16

Patrik D'haeseleer

Lawrence Livermore National Laboratory

Career Start Year 1999

Number of shared co-authors 0

Midori A Harris

University of Cambridge

Career Start Year 1998

Number of shared co-authors 18

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 16

Berend Snel

Utrecht University

Career Start Year 1998

Number of shared co-authors 2

Florencio Pazos

National Centre for Biotechnology (CNB-CSIC)

Career Start Year 1997

Number of shared co-authors 7

Marcin P Joachimiak

E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago

Career Start Year 1997

Number of shared co-authors 2

Ralf Zimmer

Ludwig-Maximilians-Universitat Munchen

Career Start Year 1995

Number of shared co-authors 0

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 8

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 5

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 13

Martijn A Huynen

Radboud University Medical Centre Nijmegen

Career Start Year 1992

Number of shared co-authors 3

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 10

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 13

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Career Start Year 1990

Number of shared co-authors 16

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 31

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 8

Martin Kuiper

Norwegian University of Science and Technology

Career Start Year 1983

Number of shared co-authors 9

Darren A Natale

Georgetown University Medical Center

Career Start Year 1982

Number of shared co-authors 24

Susan M Bridges

Mississippi State University

Career Start Year 1980

Number of shared co-authors 17

row(s) 1 - 30 of 30

Christophe Dessimoz

University of Lausanne

Co-authored papers 10

Fran Supek

Catalan Institution for Research and Advanced Studies (ICREA)

Co-authored papers 6

Tomislav ??muc

Ruder Boskovic Institute

Co-authored papers 4

Adrian M Altenhoff

ETH Zurich, Universitatstr. 6

Co-authored papers 3

Christopher Funk

University of Colorado School of Medicine

Co-authored papers 2

Qingtian Gong

Fudan University

Co-authored papers 2

Tal Ronnen Oron

Buck Institute for Research On Aging

Co-authored papers 2

Haixuan Yang

University of Galway

Co-authored papers 2

Sean D Mooney

University of Washington

Co-authored papers 2

Patricia C Babbitt

University of California san francisco

Co-authored papers 2

Hai Fang

University of Bristol

Co-authored papers 2

Stefano Toppo

University of Padova

Co-authored papers 2

Tobias Hamp

Inc. San Diego

Co-authored papers 2

Asa Ben-Hur

Colorado State University

Co-authored papers 2

Michal Linial

Institute of Life Sciences, The Hebrew University of Jerusalem

Co-authored papers 2

Karin Verspoor

National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre

Co-authored papers 2

Daisuke Kihara

Purdue University

Co-authored papers 2

Iddo Friedberg

Iowa State University

Co-authored papers 2

David T Jones

University College London

Co-authored papers 2

Wyatt T Clark

BioMarin Pharmaceutical Inc.

Co-authored papers 2

Steven E Brenner

University of California berkeley

Co-authored papers 2

Weidong Tian

Institute of Biostatistics, Fudan University

Co-authored papers 2

Rita Casadio

Department of Pharmacy and Biotechnology, University of Bologna

Co-authored papers 2

Yuanpeng Zhou

Fudan University

Co-authored papers 2

Burkhard Rost

Technical University of Munich (TUM)

Co-authored papers 2

Domenico Cozzetto

Imperial College London

Co-authored papers 2

Prajwal Bhat

Royal Holloway University of London

Co-authored papers 2

Sa??o D??eroski

Jozef Stefan Institute

Co-authored papers 2

Kevin Bryson

University of Glasgow

Co-authored papers 2

Pekka Koskinen

University of Helsinki and Helsinki University Hospital

Co-authored papers 2

1 - 30

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