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Author Details

Stuart R Miyasato
Stanford University
2005
29
21
PMIDPaper TitleJournal TitlePublished Year
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
36607068Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources.Genetics2023
34897464New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources.Genetics2022
31612944Transcriptome visualization and data availability at the Saccharomyces Genome Database.Nucleic Acids Res2020
31713622New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.Nucleic Acids Res2020
29140510Saccharomyces genome database informs human biology.Nucleic Acids Res2018
29688363Prevention of data duplication for high throughput sequencing repositories.Database (Oxford)2018
29126249The Encyclopedia of DNA elements (ENCODE): data portal update.Nucleic Acids Res2018
27738138The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data.Nucleic Acids Res2017
28403240SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.PLoS One2017
25776021Ontology application and use at the ENCODE DCC.Database (Oxford)2015
24194595The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.Nucleic Acids Res2014
24374639The reference genome sequence of Saccharomyces cerevisiae: then and now.G3 (Bethesda)2014
24185697The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny.Nucleic Acids Res2014
23161678Gene Ontology annotations and resources.Nucleic Acids Res2013
22110037Saccharomyces Genome Database: the genomics resource of budding yeast.Nucleic Acids Res2012
22080559The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.Nucleic Acids Res2012
22064862The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata.Nucleic Acids Res2012
19773420The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community.Nucleic Acids Res2010
19906697Saccharomyces Genome Database provides mutant phenotype data.Nucleic Acids Res2010
19808938New tools at the Candida Genome Database: biochemical pathways and full-text literature search.Nucleic Acids Res2010
17982175Gene Ontology annotations at SGD: new data sources and annotation methods.Nucleic Acids Res2008
17142221Expanded protein information at SGD: new pages and proteome browser.Nucleic Acids Res2007
17090582Sequence resources at the Candida Genome Database.Nucleic Acids Res2007
16381907Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.Nucleic Acids Res2006
16879419The Candida Genome Database: facilitating research on Candida albicans molecular biology.FEMS Yeast Res2006
15608216The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information.Nucleic Acids Res2005
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Collaborators

Marek S Skrzypek
Stanford University
Co-authored papers 22
Gail Binkley
Stanford University
Co-authored papers 18
J Michael Cherry
Stanford University
Co-authored papers 18
Benjamin C Hitz
Stanford University School of Medicine
Co-authored papers 13
Shuai Weng
Stanford University
Co-authored papers 12
Maria C Costanzo
The Broad Institute of Harvard and MIT
Co-authored papers 12
Stacia R Engel
Stanford University
Co-authored papers 12
Robert S Nash
Stanford University
Co-authored papers 12
Eurie L Hong
Stanford University School of Medicine
Co-authored papers 10
Edith D Wong
Stanford University
Co-authored papers 10
Kalpana Karra
Stanford University
Co-authored papers 8
Dianna G Fisk
Stanford Medicine Clinical Genomics Program
Co-authored papers 7
Rama Balakrishnan
Genentech Inc.
Co-authored papers 7
Selina S Dwight
Stanford University School of Medicine
Co-authored papers 7
Jean M Davidson
Stanford University School of Medicine
Co-authored papers 6
Julie Park
Stanford University
Co-authored papers 6
Idan Gabdank
Co-authored papers 6
Karen R Christie
Stanford University Medical School
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J Seth Strattan
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Otto Jolanki
Co-authored papers 5
Jodi E Hirschman
Broad Institute of MIT and Harvard
Co-authored papers 5
Jason A Hilton
Co-authored papers 4
Kara Dolinski
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 4
Venkat S Malladi
UT Southwestern Medical Center
Co-authored papers 4
David Botstein
Calico Life Sciences LLC
Co-authored papers 4
Brian T Lee
Genomics Institute, University of California Santa Cruz
Co-authored papers 4
Rose Oughtred
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 4
Joshua Orvis
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Marcus C Chibucos
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Jennifer R Wortman
Broad Institute of MIT and Harvard
Co-authored papers 3
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